Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 4 studies | 18% ± 1% | |
epithelial cell | 4 studies | 27% ± 2% | |
GABAergic neuron | 3 studies | 32% ± 6% | |
glutamatergic neuron | 3 studies | 42% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 28% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 4481.65 | 258 / 258 | 100% | 58.20 | 230 / 230 |
brain | 100% | 3177.06 | 2642 / 2642 | 100% | 40.34 | 705 / 705 |
esophagus | 100% | 2700.75 | 1445 / 1445 | 100% | 20.20 | 183 / 183 |
kidney | 100% | 3038.63 | 89 / 89 | 100% | 44.88 | 901 / 901 |
liver | 100% | 1836.54 | 226 / 226 | 100% | 26.69 | 406 / 406 |
prostate | 100% | 2882.57 | 245 / 245 | 100% | 45.00 | 502 / 502 |
uterus | 100% | 2724.08 | 170 / 170 | 100% | 24.67 | 459 / 459 |
breast | 100% | 2888.92 | 459 / 459 | 100% | 51.59 | 1117 / 1118 |
thymus | 100% | 2747.19 | 653 / 653 | 100% | 39.01 | 604 / 605 |
lung | 100% | 2248.20 | 577 / 578 | 100% | 27.21 | 1155 / 1155 |
bladder | 100% | 2754.52 | 21 / 21 | 100% | 25.10 | 502 / 504 |
ovary | 100% | 2244.01 | 180 / 180 | 100% | 19.79 | 428 / 430 |
intestine | 100% | 2901.27 | 966 / 966 | 99% | 24.63 | 523 / 527 |
skin | 100% | 2200.40 | 1809 / 1809 | 99% | 48.25 | 468 / 472 |
stomach | 100% | 2217.10 | 359 / 359 | 99% | 22.05 | 283 / 286 |
pancreas | 99% | 1321.22 | 326 / 328 | 99% | 27.95 | 177 / 178 |
adipose | 100% | 2903.39 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3564.61 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.15 | 29 / 29 |
spleen | 100% | 2262.36 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 22.44 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.73 | 1 / 1 |
muscle | 100% | 2781.18 | 802 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 35.59 | 79 / 80 |
heart | 99% | 3079.24 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 76% | 951.73 | 702 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0160127 | Biological process | protein-RNA covalent cross-linking repair |
GO_0016567 | Biological process | protein ubiquitination |
GO_0000209 | Biological process | protein polyubiquitination |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0007165 | Biological process | signal transduction |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0072344 | Biological process | rescue of stalled ribosome |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0060765 | Biological process | regulation of androgen receptor signaling pathway |
GO_0030521 | Biological process | androgen receptor signaling pathway |
GO_0060828 | Biological process | regulation of canonical Wnt signaling pathway |
GO_0085020 | Biological process | protein K6-linked ubiquitination |
GO_0000151 | Cellular component | ubiquitin ligase complex |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0005634 | Cellular component | nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0019787 | Molecular function | ubiquitin-like protein transferase activity |
GO_0008270 | Molecular function | zinc ion binding |
GO_0050681 | Molecular function | nuclear androgen receptor binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
GO_0031624 | Molecular function | ubiquitin conjugating enzyme binding |
Gene name | RNF14 |
Protein name | Ring finger protein 14 E3 ubiquitin-protein ligase RNF14 (EC 2.3.2.31) (Androgen receptor-associated protein 54) (HFB30) (RING finger protein 14) |
Synonyms | HRIHFB2038 ARA54 |
Description | FUNCTION: E3 ubiquitin-protein ligase that plays a key role in the RNF14-RNF25 translation quality control pathway, a pathway that takes place when a ribosome has stalled during translation, and which promotes ubiquitination and degradation of translation factors on stalled ribosomes . Recruited to stalled ribosomes by the ribosome collision sensor GCN1 and mediates 'Lys-6'-linked ubiquitination of target proteins, leading to their degradation . Mediates ubiquitination of EEF1A1/eEF1A and ETF1/eRF1 translation factors on stalled ribosomes, leading to their degradation . Also catalyzes ubiquitination of ribosomal proteins RPL0, RPL1, RPL12, RPS13 and RPS17 . Specifically required to resolve RNA-protein cross-links caused by reactive aldehydes, which trigger translation stress by stalling ribosomes: acts by catalying 'Lys-6'-linked ubiquitination of RNA-protein cross-links, leading to their removal by the ATP-dependent unfoldase VCP and subsequent degradation by the proteasome . Independently of its function in the response to stalled ribosomes, acts as a regulator of transcription in Wnt signaling via its interaction with TCF transcription factors (TCF7/TCF1, TCF7L1/TCF3 and TCF7L2/TCF4) . May also play a role as a coactivator for androgen- and, to a lesser extent, progesterone-dependent transcription . . |
Accessions | ENST00000506004.5 ENST00000347642.7 [Q9UBS8-1] D6RAS4 E7EP22 ENST00000356143.5 [Q9UBS8-1] ENST00000511961.5 D6RA38 ENST00000507291.1 ENST00000513019.5 Q9UBS8 ENST00000512565.5 ENST00000394520.7 [Q9UBS8-1] ENST00000506938.5 D6RDK2 D6RDU6 ENST00000394514.6 [Q9UBS8-2] D6R988 D6RBU3 ENST00000506822.5 D6RBK4 ENST00000515613.5 ENST00000394519.5 [Q9UBS8-1] ENST00000507163.5 D6R996 |