Name | Number of supported studies | Average coverage | |
---|---|---|---|
plasmacytoid dendritic cell | 11 studies | 26% ± 9% | |
ciliated cell | 7 studies | 26% ± 12% | |
conventional dendritic cell | 5 studies | 22% ± 10% | |
epithelial cell | 5 studies | 42% ± 13% | |
dendritic cell | 5 studies | 38% ± 13% | |
deuterosomal cell | 4 studies | 26% ± 5% | |
B cell | 4 studies | 23% ± 5% | |
goblet cell | 4 studies | 21% ± 5% | |
intestinal crypt stem cell | 4 studies | 27% ± 6% | |
brush cell | 3 studies | 32% ± 8% | |
pro-B cell | 3 studies | 21% ± 3% | |
endothelial cell | 3 studies | 28% ± 10% | |
oligodendrocyte precursor cell | 3 studies | 21% ± 4% | |
enteroendocrine cell | 3 studies | 26% ± 8% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 4666.09 | 180 / 180 | 100% | 127.82 | 430 / 430 |
stomach | 100% | 5299.19 | 359 / 359 | 100% | 149.17 | 286 / 286 |
brain | 100% | 5246.58 | 2640 / 2642 | 100% | 123.78 | 705 / 705 |
intestine | 100% | 7782.17 | 966 / 966 | 100% | 152.34 | 526 / 527 |
prostate | 100% | 6847.47 | 245 / 245 | 100% | 107.11 | 501 / 502 |
liver | 100% | 5925.63 | 226 / 226 | 100% | 81.19 | 405 / 406 |
skin | 100% | 3999.45 | 1808 / 1809 | 100% | 95.73 | 471 / 472 |
breast | 100% | 4912.83 | 459 / 459 | 99% | 98.43 | 1111 / 1118 |
thymus | 100% | 6498.91 | 653 / 653 | 99% | 80.10 | 601 / 605 |
kidney | 100% | 5817.06 | 89 / 89 | 99% | 69.30 | 891 / 901 |
pancreas | 100% | 4946.39 | 328 / 328 | 99% | 60.19 | 176 / 178 |
adrenal gland | 100% | 9780.16 | 258 / 258 | 99% | 84.03 | 227 / 230 |
lung | 100% | 4382.96 | 576 / 578 | 98% | 76.87 | 1136 / 1155 |
bladder | 100% | 5482.95 | 21 / 21 | 97% | 91.31 | 491 / 504 |
uterus | 100% | 4668.87 | 170 / 170 | 95% | 60.93 | 438 / 459 |
esophagus | 100% | 4871.50 | 1445 / 1445 | 95% | 92.95 | 174 / 183 |
adipose | 100% | 3746.02 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 89.90 | 29 / 29 |
muscle | 100% | 9933.63 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 7362.94 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 67.94 | 1 / 1 |
blood vessel | 100% | 3497.88 | 1331 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 4968.43 | 852 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 62.92 | 79 / 80 |
peripheral blood | 91% | 4076.52 | 843 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 49.73 | 38 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000191 | Biological process | regulation of fatty acid transport |
GO_0006260 | Biological process | DNA replication |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005694 | Cellular component | chromosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0031965 | Cellular component | nuclear membrane |
GO_0003723 | Molecular function | RNA binding |
GO_0043035 | Molecular function | chromatin insulator sequence binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | REPIN1 |
Protein name | HCG1990708, isoform CRA_c (Replication initiator 1) Replication initiator 1 Replication initiator 1 (60 kDa origin-specific DNA-binding protein) (60 kDa replication initiation region protein) (ATT-binding protein) (DHFR oribeta-binding protein RIP60) (Zinc finger protein 464) |
Synonyms | RIP60 hCG_1990708 ZNF464 tcag7.1235 |
Description | FUNCTION: Sequence-specific double-stranded DNA-binding protein required for initiation of chromosomal DNA replication. Binds on 5'-ATT-3' reiterated sequences downstream of the origin of bidirectional replication (OBR) and a second, homologous ATT sequence of opposite orientation situated within the OBR zone. Facilitates DNA bending. |
Accessions | A0A090N8Z2 ENST00000486714.2 ENST00000518514.1 ENST00000489432.7 [Q9BWE0-4] E5RK52 ENST00000482680.1 ENST00000519397.1 ENST00000488943.1 ENST00000466559.1 A0A090N8H1 Q9BWE0 ENST00000522266.1 C9JYJ8 C9J7L2 ENST00000475514.5 ENST00000425389.2 [Q9BWE0-3] C9J0L4 C9J590 C9JZE3 C9J7D4 ENST00000479668.5 E7EVL6 ENST00000467980.5 ENST00000397281.6 [Q9BWE0-3] ENST00000444957.3 [Q9BWE0-3] |