Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 11 studies | 44% ± 24% | |
GABAergic neuron | 9 studies | 47% ± 19% | |
endothelial cell of lymphatic vessel | 7 studies | 26% ± 7% | |
neuron | 6 studies | 33% ± 8% | |
interneuron | 6 studies | 47% ± 20% | |
oligodendrocyte precursor cell | 6 studies | 21% ± 5% | |
retinal ganglion cell | 6 studies | 50% ± 23% | |
cardiac muscle cell | 5 studies | 25% ± 5% | |
mesothelial cell | 5 studies | 28% ± 13% | |
smooth muscle cell | 4 studies | 20% ± 5% | |
endothelial cell | 3 studies | 38% ± 15% | |
GABAergic interneuron | 3 studies | 41% ± 11% | |
granule cell | 3 studies | 21% ± 5% | |
ciliated cell | 3 studies | 21% ± 2% | |
rod bipolar cell | 3 studies | 21% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 38% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 93% | 3192.63 | 2444 / 2642 | 99% | 26.03 | 700 / 705 |
prostate | 62% | 1240.98 | 152 / 245 | 83% | 5.09 | 418 / 502 |
uterus | 89% | 2277.31 | 152 / 170 | 53% | 6.02 | 242 / 459 |
esophagus | 74% | 4127.52 | 1069 / 1445 | 55% | 3.36 | 101 / 183 |
intestine | 80% | 4667.03 | 768 / 966 | 43% | 3.23 | 224 / 527 |
bladder | 90% | 3758.33 | 19 / 21 | 29% | 2.48 | 146 / 504 |
breast | 28% | 280.76 | 127 / 459 | 83% | 14.24 | 924 / 1118 |
stomach | 56% | 1181.61 | 202 / 359 | 53% | 5.03 | 153 / 286 |
pancreas | 39% | 397.24 | 129 / 328 | 65% | 5.01 | 116 / 178 |
blood vessel | 98% | 3242.30 | 1305 / 1335 | 0% | 0 | 0 / 0 |
heart | 88% | 1622.80 | 757 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 14% | 135.80 | 35 / 258 | 74% | 30.85 | 171 / 230 |
lung | 52% | 466.47 | 298 / 578 | 34% | 2.41 | 393 / 1155 |
muscle | 77% | 1100.36 | 619 / 803 | 0% | 0 | 0 / 0 |
adipose | 45% | 587.04 | 536 / 1204 | 0% | 0 | 0 / 0 |
ovary | 10% | 190.88 | 18 / 180 | 33% | 1.54 | 140 / 430 |
thymus | 19% | 153.03 | 122 / 653 | 23% | 1.18 | 140 / 605 |
kidney | 7% | 55.37 | 6 / 89 | 31% | 1.45 | 278 / 901 |
eye | 0% | 0 | 0 / 0 | 35% | 1.96 | 28 / 80 |
tonsil | 0% | 0 | 0 / 0 | 22% | 0.80 | 10 / 45 |
liver | 1% | 8.10 | 2 / 226 | 16% | 1.11 | 65 / 406 |
spleen | 15% | 122.44 | 37 / 241 | 0% | 0 | 0 / 0 |
skin | 7% | 66.64 | 135 / 1809 | 5% | 0.27 | 22 / 472 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.34 | 1 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051205 | Biological process | protein insertion into membrane |
GO_0071786 | Biological process | endoplasmic reticulum tubular network organization |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0071782 | Cellular component | endoplasmic reticulum tubular network |
GO_0005737 | Cellular component | cytoplasm |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005881 | Cellular component | cytoplasmic microtubule |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0031849 | Molecular function | olfactory receptor binding |
GO_0005515 | Molecular function | protein binding |
GO_0008017 | Molecular function | microtubule binding |
Gene name | REEP1 |
Protein name | Receptor expression-enhancing protein Receptor accessory protein 1 Receptor expression-enhancing protein 1 (Spastic paraplegia 31 protein) |
Synonyms | SPG31 C2orf23 |
Description | FUNCTION: Required for endoplasmic reticulum (ER) network formation, shaping and remodeling; it links ER tubules to the cytoskeleton. May also enhance the cell surface expression of odorant receptors . May play a role in long-term axonal maintenance . . |
Accessions | ENST00000165698.9 [Q9H902-1] A0A2R8YD64 A0A2R8Y6K6 ENST00000688400.1 ENST00000693329.1 ENST00000691703.1 ENST00000538924.7 A0A2R8Y5P1 ENST00000689156.1 A0A8I5KTX0 ENST00000642243.1 A0A8I5KTB5 ENST00000692664.1 ENST00000643817.2 A0A1C7CYY3 Q9H902 ENST00000535845.6 [Q9H902-2] ENST00000644644.1 A0A8I5KRE1 ENST00000489855.2 A0A8I5KQB8 U3KPV7 ENST00000541910.6 [Q9H902-4] A0A8I5KQI3 ENST00000453231.6 [Q9H902-3] A0A8I5QKJ2 A0A8I5KX93 ENST00000686220.1 ENST00000691093.1 |