Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal cone cell | 9 studies | 75% ± 22% | |
retinal rod cell | 9 studies | 84% ± 13% | |
amacrine cell | 4 studies | 42% ± 7% | |
retinal bipolar neuron | 3 studies | 47% ± 4% | |
retinal ganglion cell | 3 studies | 40% ± 25% | |
OFF-bipolar cell | 3 studies | 40% ± 6% | |
retina horizontal cell | 3 studies | 39% ± 15% | |
microglial cell | 3 studies | 47% ± 15% | |
Mueller cell | 3 studies | 44% ± 19% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
eye | 9 studies | 48% ± 24% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 93% | 74.21 | 2469 / 2642 | 14% | 0.24 | 99 / 705 |
uterus | 96% | 42.06 | 164 / 170 | 1% | 0.02 | 6 / 459 |
spleen | 98% | 53.03 | 235 / 241 | 0% | 0 | 0 / 0 |
adipose | 96% | 39.69 | 1158 / 1204 | 0% | 0 | 0 / 0 |
bladder | 95% | 35.86 | 20 / 21 | 0% | 0.01 | 2 / 504 |
intestine | 92% | 27.67 | 884 / 966 | 1% | 0.05 | 3 / 527 |
breast | 89% | 23.98 | 409 / 459 | 1% | 0.01 | 9 / 1118 |
heart | 88% | 32.16 | 760 / 861 | 0% | 0 | 0 / 0 |
lung | 79% | 21.09 | 458 / 578 | 0% | 0.00 | 3 / 1155 |
skin | 68% | 29.04 | 1229 / 1809 | 11% | 0.29 | 50 / 472 |
prostate | 77% | 17.66 | 189 / 245 | 0% | 0.02 | 1 / 502 |
esophagus | 74% | 20.38 | 1065 / 1445 | 0% | 0 | 0 / 183 |
peripheral blood | 65% | 73.93 | 606 / 929 | 0% | 0 | 0 / 0 |
stomach | 55% | 12.31 | 197 / 359 | 1% | 0.02 | 4 / 286 |
ovary | 53% | 9.90 | 96 / 180 | 1% | 0.01 | 3 / 430 |
blood vessel | 46% | 9.62 | 608 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 41% | 5.30 | 107 / 258 | 1% | 0.02 | 3 / 230 |
thymus | 41% | 5.78 | 265 / 653 | 0% | 0.00 | 2 / 605 |
eye | 0% | 0 | 0 / 0 | 25% | 30.25 | 20 / 80 |
liver | 23% | 2.55 | 51 / 226 | 0% | 0.00 | 1 / 406 |
pancreas | 15% | 1.92 | 50 / 328 | 4% | 0.07 | 7 / 178 |
kidney | 11% | 1.21 | 10 / 89 | 0% | 0.00 | 1 / 901 |
muscle | 11% | 1.40 | 91 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.04 | 1 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007165 | Biological process | signal transduction |
GO_0007601 | Biological process | visual perception |
GO_0007602 | Biological process | phototransduction |
GO_0051924 | Biological process | regulation of calcium ion transport |
GO_0043204 | Cellular component | perikaryon |
GO_0001917 | Cellular component | photoreceptor inner segment |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0016020 | Cellular component | membrane |
GO_0030425 | Cellular component | dendrite |
GO_0005509 | Molecular function | calcium ion binding |
GO_0008048 | Molecular function | calcium sensitive guanylate cyclase activator activity |
Gene name | RCVRN |
Protein name | Recoverin (Cancer-associated retinopathy protein) (Protein CAR) |
Synonyms | RCV1 |
Description | FUNCTION: Acts as a calcium sensor and regulates phototransduction of cone and rod photoreceptor cells (By similarity). Modulates light sensitivity of cone photoreceptor in dark and dim conditions (By similarity). In response to high Ca(2+) levels induced by low light levels, prolongs RHO/rhodopsin activation in rod photoreceptor cells by binding to and inhibiting GRK1-mediated phosphorylation of RHO/rhodopsin (By similarity). Plays a role in scotopic vision/enhances vision in dim light by enhancing signal transfer between rod photoreceptors and rod bipolar cells (By similarity). Improves rod photoreceptor sensitivity in dim light and mediates response of rod photoreceptors to facilitate detection of change and motion in bright light (By similarity). . |
Accessions | P35243 ENST00000226193.6 |