Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 27 studies | 43% ± 22% | |
endothelial cell | 16 studies | 40% ± 23% | |
connective tissue cell | 14 studies | 59% ± 25% | |
endothelial cell of lymphatic vessel | 13 studies | 57% ± 28% | |
smooth muscle cell | 12 studies | 51% ± 27% | |
pericyte | 10 studies | 44% ± 18% | |
myofibroblast cell | 8 studies | 65% ± 21% | |
basal cell | 6 studies | 34% ± 15% | |
mesothelial cell | 6 studies | 42% ± 23% | |
ionocyte | 5 studies | 39% ± 6% | |
capillary endothelial cell | 5 studies | 43% ± 14% | |
progenitor cell | 5 studies | 50% ± 27% | |
abnormal cell | 5 studies | 29% ± 13% | |
epithelial cell | 5 studies | 40% ± 18% | |
neuron | 5 studies | 72% ± 25% | |
ciliated cell | 5 studies | 66% ± 24% | |
secretory cell | 4 studies | 60% ± 20% | |
pancreatic A cell | 4 studies | 33% ± 6% | |
endothelial cell of artery | 4 studies | 47% ± 20% | |
vein endothelial cell | 4 studies | 56% ± 25% | |
retinal pigment epithelial cell | 4 studies | 64% ± 24% | |
acinar cell | 4 studies | 53% ± 6% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 33% ± 7% | |
duct epithelial cell | 3 studies | 20% ± 5% | |
pancreatic D cell | 3 studies | 61% ± 21% | |
type B pancreatic cell | 3 studies | 38% ± 17% | |
enterocyte | 3 studies | 28% ± 15% | |
enteroendocrine cell | 3 studies | 66% ± 8% | |
neural crest cell | 3 studies | 70% ± 31% | |
endothelial cell of vascular tree | 3 studies | 20% ± 3% | |
myoepithelial cell | 3 studies | 30% ± 10% | |
pancreatic ductal cell | 3 studies | 75% ± 1% | |
oligodendrocyte precursor cell | 3 studies | 45% ± 30% | |
glial cell | 3 studies | 46% ± 32% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 10662.98 | 258 / 258 | 98% | 168.26 | 226 / 230 |
ovary | 100% | 41180.84 | 180 / 180 | 95% | 104.25 | 408 / 430 |
pancreas | 100% | 10609.20 | 328 / 328 | 87% | 60.28 | 154 / 178 |
uterus | 99% | 3951.20 | 169 / 170 | 80% | 119.04 | 365 / 459 |
esophagus | 96% | 1042.58 | 1389 / 1445 | 51% | 43.74 | 94 / 183 |
liver | 99% | 1964.44 | 224 / 226 | 48% | 44.21 | 195 / 406 |
lung | 96% | 803.80 | 556 / 578 | 45% | 42.03 | 514 / 1155 |
brain | 100% | 1751.99 | 2632 / 2642 | 40% | 46.30 | 282 / 705 |
bladder | 100% | 2044.62 | 21 / 21 | 34% | 28.31 | 170 / 504 |
breast | 73% | 886.37 | 337 / 459 | 55% | 41.18 | 620 / 1118 |
intestine | 92% | 792.67 | 892 / 966 | 26% | 16.52 | 139 / 527 |
prostate | 99% | 1422.46 | 243 / 245 | 12% | 3.05 | 59 / 502 |
stomach | 84% | 704.75 | 300 / 359 | 24% | 13.01 | 69 / 286 |
kidney | 93% | 906.58 | 83 / 89 | 13% | 3.44 | 119 / 901 |
spleen | 100% | 1383.10 | 241 / 241 | 0% | 0 | 0 / 0 |
thymus | 57% | 327.51 | 373 / 653 | 34% | 11.02 | 205 / 605 |
heart | 89% | 862.87 | 768 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 104.87 | 38 / 45 |
skin | 59% | 495.52 | 1065 / 1809 | 17% | 8.26 | 79 / 472 |
blood vessel | 61% | 625.27 | 811 / 1335 | 0% | 0 | 0 / 0 |
adipose | 43% | 326.33 | 513 / 1204 | 0% | 0 | 0 / 0 |
muscle | 13% | 55.81 | 101 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 6% | 2.09 | 5 / 80 |
peripheral blood | 1% | 7.82 | 11 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015908 | Biological process | fatty acid transport |
GO_0055088 | Biological process | lipid homeostasis |
GO_0006776 | Biological process | vitamin A metabolic process |
GO_0002138 | Biological process | retinoic acid biosynthetic process |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005811 | Cellular component | lipid droplet |
GO_0005634 | Cellular component | nucleus |
GO_0005501 | Molecular function | retinoid binding |
GO_0005504 | Molecular function | fatty acid binding |
GO_0016918 | Molecular function | retinal binding |
GO_0005515 | Molecular function | protein binding |
GO_1904768 | Molecular function | all-trans-retinol binding |
Gene name | RBP1 |
Protein name | Retinol-binding protein 1 (Cellular retinol-binding protein) (CRBP) (Cellular retinol-binding protein I) (CRBP-I) Retinol binding protein 1 |
Synonyms | hCG_16055 CRBP1 |
Description | FUNCTION: Cytoplasmic retinol-binding protein . Accepts retinol from the transport protein STRA6, and thereby contributes to retinol uptake, storage and retinoid homeostasis . . |
Accessions | ENST00000672186.1 ENST00000483943.6 ENST00000487424.2 A0A0A0MQT0 ENST00000617459.4 [P09455-2] P09455 ENST00000619087.5 [P09455-1] A0A0A0MTB9 ENST00000232219.6 H0YAK8 ENST00000492918.1 [P09455-3] |