Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 5 studies | 24% ± 6% | |
GABAergic neuron | 5 studies | 31% ± 8% | |
neuron | 4 studies | 36% ± 8% | |
astrocyte | 4 studies | 20% ± 3% | |
glutamatergic neuron | 4 studies | 41% ± 8% | |
oligodendrocyte | 4 studies | 19% ± 2% | |
basal cell | 3 studies | 21% ± 4% | |
ciliated cell | 3 studies | 20% ± 4% | |
oligodendrocyte precursor cell | 3 studies | 27% ± 3% | |
interneuron | 3 studies | 35% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1031.05 | 1445 / 1445 | 100% | 10.37 | 183 / 183 |
ovary | 100% | 2148.10 | 180 / 180 | 100% | 13.66 | 430 / 430 |
prostate | 100% | 1828.46 | 245 / 245 | 100% | 15.20 | 502 / 502 |
uterus | 100% | 1875.02 | 170 / 170 | 100% | 17.90 | 459 / 459 |
brain | 100% | 1790.26 | 2641 / 2642 | 100% | 29.01 | 705 / 705 |
thymus | 100% | 1581.69 | 653 / 653 | 100% | 15.43 | 604 / 605 |
intestine | 100% | 1261.44 | 966 / 966 | 100% | 9.82 | 525 / 527 |
bladder | 100% | 1229.90 | 21 / 21 | 100% | 13.64 | 502 / 504 |
breast | 100% | 970.43 | 457 / 459 | 100% | 18.39 | 1117 / 1118 |
lung | 99% | 805.60 | 575 / 578 | 100% | 12.90 | 1153 / 1155 |
skin | 100% | 1067.52 | 1808 / 1809 | 99% | 12.71 | 468 / 472 |
stomach | 100% | 872.84 | 358 / 359 | 99% | 9.72 | 283 / 286 |
pancreas | 100% | 672.52 | 327 / 328 | 99% | 11.03 | 176 / 178 |
kidney | 100% | 1090.07 | 89 / 89 | 98% | 10.86 | 882 / 901 |
adrenal gland | 100% | 1326.03 | 258 / 258 | 97% | 13.44 | 223 / 230 |
liver | 100% | 660.85 | 226 / 226 | 96% | 7.47 | 388 / 406 |
eye | 0% | 0 | 0 / 0 | 100% | 15.23 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 15.12 | 29 / 29 |
spleen | 100% | 1423.86 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.33 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.73 | 1 / 1 |
adipose | 100% | 701.29 | 1199 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 807.62 | 1327 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 560.58 | 840 / 861 | 0% | 0 | 0 / 0 |
muscle | 97% | 529.47 | 778 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 75% | 485.81 | 696 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0043153 | Biological process | entrainment of circadian clock by photoperiod |
GO_0032922 | Biological process | circadian regulation of gene expression |
GO_0007623 | Biological process | circadian rhythm |
GO_0006417 | Biological process | regulation of translation |
GO_0016607 | Cellular component | nuclear speck |
GO_0005730 | Cellular component | nucleolus |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | RBM4B |
Protein name | RNA-binding protein 4B (RNA-binding motif protein 30) (RNA-binding motif protein 4B) (RNA-binding protein 30) RNA binding motif protein 4B |
Synonyms | RBM30 |
Description | FUNCTION: Required for the translational activation of PER1 mRNA in response to circadian clock. Binds directly to the 3'-UTR of the PER1 mRNA (By similarity). . |
Accessions | H0YDG8 Q9BQ04 ENST00000531969.5 ENST00000528106.2 ENST00000310046.9 ENST00000531036.2 ENST00000524637.1 ENST00000525754.5 E9PM61 U3KQD5 E9PLB0 |