PRPF4 | OmnibusX

Name	Number of supported studies	Average coverage
epithelial cell	3 studies	28% ± 7%	Explore
dendritic cell	3 studies	24% ± 1%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of PRPF4 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	1718.10	459 / 459	100%	42.43	1118 / 1118
esophagus	100%	1611.15	1445 / 1445	100%	42.04	183 / 183
lung	100%	1463.53	578 / 578	100%	37.89	1155 / 1155
ovary	100%	2087.49	180 / 180	100%	31.61	430 / 430
prostate	100%	2088.78	245 / 245	100%	31.88	502 / 502
stomach	100%	1215.35	359 / 359	100%	34.28	286 / 286
uterus	100%	1698.81	170 / 170	100%	44.60	459 / 459
intestine	100%	1547.47	966 / 966	100%	38.28	526 / 527
skin	100%	2547.24	1809 / 1809	100%	36.26	471 / 472
bladder	100%	1716.19	21 / 21	100%	34.32	502 / 504
thymus	100%	1673.28	653 / 653	99%	22.83	601 / 605
brain	99%	1095.82	2624 / 2642	100%	32.09	705 / 705
kidney	100%	1539.34	89 / 89	99%	24.77	891 / 901
pancreas	100%	990.03	328 / 328	99%	25.49	176 / 178
liver	100%	1277.23	226 / 226	97%	16.09	394 / 406
adrenal gland	100%	1997.50	258 / 258	97%	29.60	223 / 230
adipose	100%	1671.56	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1337.33	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	43.59	29 / 29
muscle	100%	1480.84	803 / 803	0%	0	0 / 0
spleen	100%	1701.20	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	49.68	45 / 45
ureter	0%	0	0 / 0	100%	15.96	1 / 1
heart	98%	940.92	844 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	98%	23.42	78 / 80
peripheral blood	97%	1565.79	903 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_0008380	Biological process	RNA splicing
GO_0000375	Biological process	RNA splicing, via transesterification reactions
GO_0006396	Biological process	RNA processing
GO_0015030	Cellular component	Cajal body
GO_0097525	Cellular component	spliceosomal snRNP complex
GO_0016607	Cellular component	nuclear speck
GO_0046540	Cellular component	U4/U6 x U5 tri-snRNP complex
GO_0005654	Cellular component	nucleoplasm
GO_0071001	Cellular component	U4/U6 snRNP
GO_0005681	Cellular component	spliceosomal complex
GO_0071005	Cellular component	U2-type precatalytic spliceosome
GO_0005634	Cellular component	nucleus
GO_0017070	Molecular function	U6 snRNA binding
GO_0030621	Molecular function	U4 snRNA binding
GO_0005515	Molecular function	protein binding

Gene name	PRPF4
Protein name	U4/U6 small nuclear ribonucleoprotein Prp4 (PRP4 homolog) (hPrp4) (U4/U6 snRNP 60 kDa protein) (WD splicing factor Prp4) 60 kDa U4/U6 snRNP-specific spliceosomal protein (PRP4 pre-mRNA processing factor 4 homolog (Yeast), isoform CRA_b) PRPF4 protein
Synonyms	hCG_29193 PRP4
Description	FUNCTION: Plays a role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). .
Accessions	Q5T1M7 ENST00000374198.5 [O43172-2] O43172 ENST00000374199.9 [O43172-1] Q6IAP9

PRPF4 report