PPCDC report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	6 studies	23% ± 6%	Explore
oligodendrocyte	6 studies	23% ± 4%	Explore
macrophage	5 studies	25% ± 5%	Explore
astrocyte	5 studies	28% ± 8%	Explore
non-classical monocyte	4 studies	22% ± 8%	Explore
glutamatergic neuron	4 studies	31% ± 9%	Explore
plasma cell	3 studies	22% ± 7%	Explore
epithelial cell	3 studies	19% ± 2%	Explore
endothelial cell of lymphatic vessel	3 studies	22% ± 1%	Explore
GABAergic neuron	3 studies	27% ± 11%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	28% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	534.71	1445 / 1445	100%	6.34	183 / 183
intestine	100%	440.22	966 / 966	100%	8.35	527 / 527
pancreas	100%	463.87	328 / 328	100%	9.10	178 / 178
prostate	100%	667.35	245 / 245	100%	14.31	502 / 502
thymus	100%	592.57	653 / 653	100%	12.59	605 / 605
uterus	100%	461.78	170 / 170	100%	12.41	459 / 459
skin	100%	415.99	1807 / 1809	100%	11.05	472 / 472
lung	100%	531.54	577 / 578	100%	9.63	1155 / 1155
bladder	100%	505.10	21 / 21	100%	10.85	503 / 504
kidney	100%	613.38	89 / 89	100%	8.41	898 / 901
stomach	100%	404.12	359 / 359	100%	7.16	285 / 286
breast	100%	512.42	459 / 459	100%	11.22	1114 / 1118
adrenal gland	100%	869.74	258 / 258	100%	9.46	229 / 230
ovary	100%	391.54	180 / 180	99%	7.21	427 / 430
liver	100%	341.65	226 / 226	99%	7.69	403 / 406
brain	98%	245.49	2584 / 2642	100%	6.90	705 / 705
adipose	100%	473.60	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	18.05	29 / 29
spleen	100%	939.64	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	10.27	45 / 45
ureter	0%	0	0 / 0	100%	14.94	1 / 1
blood vessel	100%	444.52	1332 / 1335	0%	0	0 / 0
peripheral blood	100%	1229.44	926 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	99%	9.36	79 / 80
muscle	98%	293.35	786 / 803	0%	0	0 / 0
heart	98%	245.83	842 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0