Name | Number of supported studies | Average coverage | |
---|---|---|---|
non-classical monocyte | 13 studies | 25% ± 10% | |
macrophage | 12 studies | 22% ± 6% | |
monocyte | 8 studies | 26% ± 10% | |
classical monocyte | 7 studies | 24% ± 9% | |
neutrophil | 6 studies | 20% ± 3% | |
glutamatergic neuron | 6 studies | 40% ± 21% | |
interneuron | 6 studies | 41% ± 18% | |
dendritic cell | 6 studies | 26% ± 7% | |
GABAergic neuron | 6 studies | 36% ± 18% | |
astrocyte | 5 studies | 25% ± 10% | |
oligodendrocyte precursor cell | 5 studies | 22% ± 7% | |
myeloid cell | 5 studies | 28% ± 10% | |
mast cell | 4 studies | 19% ± 2% | |
conventional dendritic cell | 3 studies | 27% ± 9% | |
endothelial cell | 3 studies | 33% ± 18% | |
GABAergic interneuron | 3 studies | 23% ± 7% | |
neuron | 3 studies | 31% ± 6% | |
mononuclear phagocyte | 3 studies | 17% ± 1% | |
melanocyte | 3 studies | 60% ± 29% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 33% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 97% | 1003.24 | 249 / 258 | 97% | 32.77 | 222 / 230 |
skin | 90% | 801.44 | 1634 / 1809 | 98% | 70.13 | 461 / 472 |
brain | 92% | 1691.85 | 2426 / 2642 | 94% | 10.28 | 662 / 705 |
lung | 100% | 2618.66 | 577 / 578 | 85% | 9.05 | 984 / 1155 |
breast | 82% | 845.52 | 376 / 459 | 94% | 14.45 | 1046 / 1118 |
thymus | 85% | 711.54 | 558 / 653 | 85% | 21.64 | 513 / 605 |
ovary | 98% | 2518.07 | 176 / 180 | 65% | 4.15 | 281 / 430 |
uterus | 96% | 1547.98 | 164 / 170 | 59% | 4.91 | 273 / 459 |
kidney | 74% | 414.62 | 66 / 89 | 79% | 7.71 | 716 / 901 |
esophagus | 71% | 647.52 | 1029 / 1445 | 70% | 6.08 | 128 / 183 |
bladder | 86% | 473.52 | 18 / 21 | 50% | 3.71 | 251 / 504 |
intestine | 82% | 648.34 | 793 / 966 | 53% | 4.27 | 279 / 527 |
stomach | 51% | 324.58 | 182 / 359 | 67% | 6.40 | 193 / 286 |
prostate | 81% | 578.94 | 199 / 245 | 35% | 1.80 | 176 / 502 |
pancreas | 22% | 124.89 | 73 / 328 | 90% | 10.36 | 160 / 178 |
eye | 0% | 0 | 0 / 0 | 100% | 108.73 | 80 / 80 |
spleen | 100% | 4070.51 | 241 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 13971.95 | 928 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 20.53 | 26 / 29 |
adipose | 90% | 993.17 | 1078 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 73% | 6.12 | 33 / 45 |
blood vessel | 66% | 513.71 | 878 / 1335 | 0% | 0 | 0 / 0 |
liver | 13% | 64.82 | 30 / 226 | 50% | 3.96 | 203 / 406 |
heart | 47% | 257.29 | 404 / 861 | 0% | 0 | 0 / 0 |
muscle | 21% | 114.03 | 169 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0008360 | Biological process | regulation of cell shape |
GO_1905806 | Biological process | regulation of synapse pruning |
GO_0007162 | Biological process | negative regulation of cell adhesion |
GO_0071526 | Biological process | semaphorin-plexin signaling pathway |
GO_0007155 | Biological process | cell adhesion |
GO_0043087 | Biological process | regulation of GTPase activity |
GO_0030334 | Biological process | regulation of cell migration |
GO_0050772 | Biological process | positive regulation of axonogenesis |
GO_0002116 | Cellular component | semaphorin receptor complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0150053 | Cellular component | cerebellar climbing fiber to Purkinje cell synapse |
GO_0016020 | Cellular component | membrane |
GO_0017154 | Molecular function | semaphorin receptor activity |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | PLXNC1 |
Protein name | Plexin C1 (cDNA FLJ60256, highly similar to Plexin-C1) Plexin-C1 (Virus-encoded semaphorin protein receptor) (CD antigen CD232) Plexin C1 |
Synonyms | VESPR |
Description | FUNCTION: Receptor for SEMA7A, for smallpox semaphorin A39R, vaccinia virus semaphorin A39R and for herpesvirus Sema protein. Binding of semaphorins triggers cellular responses leading to the rearrangement of the cytoskeleton and to secretion of IL6 and IL8 (By similarity). . |
Accessions | F8VUW4 F5H3A2 B4DHQ7 ENST00000258526.9 ENST00000550080.5 F8W1K6 ENST00000549217.5 ENST00000545312.1 F8W095 ENST00000547057.5 ENST00000551850.1 O60486 |