Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 6 studies | 23% ± 6% | |
epithelial cell | 5 studies | 26% ± 7% | |
abnormal cell | 4 studies | 27% ± 8% | |
macrophage | 4 studies | 21% ± 2% | |
oligodendrocyte | 4 studies | 26% ± 10% | |
dendritic cell | 3 studies | 24% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 2815.90 | 226 / 226 | 100% | 72.18 | 406 / 406 |
skin | 100% | 4744.52 | 1807 / 1809 | 100% | 356.12 | 472 / 472 |
stomach | 100% | 2573.75 | 359 / 359 | 99% | 103.79 | 284 / 286 |
intestine | 100% | 4164.32 | 966 / 966 | 99% | 117.98 | 522 / 527 |
ovary | 100% | 2897.09 | 180 / 180 | 99% | 44.83 | 424 / 430 |
kidney | 100% | 3151.03 | 89 / 89 | 98% | 73.41 | 887 / 901 |
adrenal gland | 100% | 2774.30 | 258 / 258 | 98% | 67.04 | 226 / 230 |
thymus | 100% | 3116.58 | 653 / 653 | 98% | 34.67 | 592 / 605 |
prostate | 100% | 2732.99 | 244 / 245 | 98% | 40.07 | 493 / 502 |
breast | 100% | 3862.32 | 459 / 459 | 98% | 51.70 | 1093 / 1118 |
lung | 100% | 4514.79 | 578 / 578 | 98% | 60.15 | 1129 / 1155 |
bladder | 100% | 4028.86 | 21 / 21 | 98% | 70.13 | 492 / 504 |
pancreas | 100% | 2389.64 | 328 / 328 | 97% | 72.84 | 173 / 178 |
brain | 95% | 1514.31 | 2520 / 2642 | 98% | 53.29 | 692 / 705 |
esophagus | 97% | 2874.95 | 1399 / 1445 | 97% | 73.72 | 177 / 183 |
uterus | 100% | 4409.53 | 170 / 170 | 92% | 49.74 | 421 / 459 |
adipose | 100% | 4473.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 210.95 | 80 / 80 |
spleen | 100% | 3677.43 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 26.39 | 1 / 1 |
blood vessel | 100% | 3513.11 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 2768.36 | 854 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 31.92 | 28 / 29 |
tonsil | 0% | 0 | 0 / 0 | 93% | 41.55 | 42 / 45 |
muscle | 87% | 1011.38 | 698 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 82% | 1259.75 | 763 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048730 | Biological process | epidermis morphogenesis |
GO_0001701 | Biological process | in utero embryonic development |
GO_0046947 | Biological process | hydroxylysine biosynthetic process |
GO_0017185 | Biological process | peptidyl-lysine hydroxylation |
GO_0060425 | Biological process | lung morphogenesis |
GO_0006493 | Biological process | protein O-linked glycosylation |
GO_0008104 | Biological process | protein localization |
GO_0030199 | Biological process | collagen fibril organization |
GO_0001886 | Biological process | endothelial cell morphogenesis |
GO_0042311 | Biological process | vasodilation |
GO_0021915 | Biological process | neural tube development |
GO_0032963 | Biological process | collagen metabolic process |
GO_0070831 | Biological process | basement membrane assembly |
GO_0005615 | Cellular component | extracellular space |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005791 | Cellular component | rough endoplasmic reticulum |
GO_0031418 | Molecular function | L-ascorbic acid binding |
GO_0050211 | Molecular function | procollagen galactosyltransferase activity |
GO_0036094 | Molecular function | small molecule binding |
GO_0005506 | Molecular function | iron ion binding |
GO_0008475 | Molecular function | procollagen-lysine 5-dioxygenase activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0033823 | Molecular function | procollagen glucosyltransferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | PLOD3 |
Protein name | Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 [Includes: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (EC 1.14.11.4) (Lysyl hydroxylase 3) (LH3); Procollagen glycosyltransferase (EC 2.4.1.50) (EC 2.4.1.66) (Galactosylhydroxylysine-glucosyltransferase) (Procollagen galactosyltransferase) (Procollagen glucosyltransferase)] |
Synonyms | |
Description | FUNCTION: Multifunctional enzyme that catalyzes a series of essential post-translational modifications on Lys residues in procollagen . Plays a redundant role in catalyzing the formation of hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens . Plays a redundant role in catalyzing the transfer of galactose onto hydroxylysine groups, giving rise to galactosyl 5-hydroxylysine . Has an essential role by catalyzing the subsequent transfer of glucose moieties, giving rise to 1,2-glucosylgalactosyl-5-hydroxylysine residues . Catalyzes hydroxylation and glycosylation of Lys residues in the MBL1 collagen-like domain, giving rise to hydroxylysine and 1,2-glucosylgalactosyl-5-hydroxylysine residues . Essential for normal biosynthesis and secretion of type IV collagens (Probable). Essential for normal formation of basement membranes (By similarity). . |
Accessions | H7C0B8 ENST00000421736.1 H7C2S8 ENST00000456079.1 H7C2V1 ENST00000440925.1 H7C2A8 ENST00000223127.8 O60568 C9JIX5 ENST00000414785.5 ENST00000424135.5 C9JU11 ENST00000454310.5 |