Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 30 studies | 36% ± 16% | |
oligodendrocyte precursor cell | 15 studies | 45% ± 15% | |
astrocyte | 13 studies | 31% ± 15% | |
vein endothelial cell | 13 studies | 31% ± 8% | |
oligodendrocyte | 12 studies | 28% ± 9% | |
capillary endothelial cell | 11 studies | 32% ± 12% | |
glutamatergic neuron | 9 studies | 35% ± 19% | |
endothelial cell of artery | 8 studies | 30% ± 14% | |
GABAergic neuron | 7 studies | 30% ± 11% | |
endothelial cell of vascular tree | 6 studies | 27% ± 11% | |
neuron | 5 studies | 33% ± 15% | |
pancreatic A cell | 4 studies | 51% ± 16% | |
ciliated cell | 4 studies | 20% ± 6% | |
interneuron | 4 studies | 26% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 2011.62 | 2604 / 2642 | 100% | 42.07 | 702 / 705 |
lung | 100% | 5253.53 | 578 / 578 | 83% | 7.38 | 954 / 1155 |
pancreas | 93% | 505.03 | 305 / 328 | 83% | 7.83 | 148 / 178 |
thymus | 99% | 957.63 | 647 / 653 | 76% | 6.19 | 461 / 605 |
esophagus | 72% | 348.02 | 1039 / 1445 | 70% | 5.74 | 129 / 183 |
kidney | 76% | 509.46 | 68 / 89 | 61% | 13.13 | 551 / 901 |
breast | 62% | 299.36 | 286 / 459 | 71% | 4.71 | 798 / 1118 |
stomach | 65% | 337.31 | 232 / 359 | 66% | 5.30 | 188 / 286 |
adrenal gland | 62% | 314.60 | 160 / 258 | 63% | 10.72 | 146 / 230 |
uterus | 94% | 579.55 | 159 / 170 | 28% | 2.00 | 127 / 459 |
bladder | 76% | 305.76 | 16 / 21 | 40% | 2.52 | 201 / 504 |
intestine | 70% | 386.04 | 672 / 966 | 43% | 2.88 | 226 / 527 |
spleen | 100% | 6399.83 | 241 / 241 | 0% | 0 | 0 / 0 |
prostate | 65% | 365.60 | 160 / 245 | 33% | 4.53 | 168 / 502 |
heart | 82% | 414.04 | 702 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 72% | 363.42 | 956 / 1335 | 0% | 0 | 0 / 0 |
adipose | 70% | 390.18 | 843 / 1204 | 0% | 0 | 0 / 0 |
ovary | 29% | 120.78 | 52 / 180 | 20% | 1.73 | 87 / 430 |
liver | 12% | 45.96 | 26 / 226 | 28% | 1.53 | 114 / 406 |
tonsil | 0% | 0 | 0 / 0 | 33% | 1.48 | 15 / 45 |
skin | 3% | 8.84 | 50 / 1809 | 26% | 2.40 | 122 / 472 |
lymph node | 0% | 0 | 0 / 0 | 14% | 0.47 | 4 / 29 |
eye | 0% | 0 | 0 / 0 | 3% | 0.08 | 2 / 80 |
muscle | 2% | 4.96 | 14 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.50 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0099560 | Biological process | synaptic membrane adhesion |
GO_0050805 | Biological process | negative regulation of synaptic transmission |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0007155 | Biological process | cell adhesion |
GO_1904071 | Biological process | presynaptic active zone assembly |
GO_2000807 | Biological process | regulation of synaptic vesicle clustering |
GO_0030534 | Biological process | adult behavior |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0098982 | Cellular component | GABA-ergic synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0045211 | Cellular component | postsynaptic membrane |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | PCDH17 |
Protein name | Protocadherin 17 Protocadherin-17 (Protocadherin-68) |
Synonyms | PCH68 PCDH68 |
Description | FUNCTION: Potential calcium-dependent cell-adhesion protein. |
Accessions | ENST00000484979.5 [O14917-2] A0A087X099 A0A087WXV2 ENST00000615375.1 ENST00000612954.4 ENST00000377918.8 [O14917-1] O14917 |