Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 15 studies | 90% ± 12% | |
GABAergic neuron | 10 studies | 47% ± 21% | |
glutamatergic neuron | 8 studies | 39% ± 17% | |
astrocyte | 7 studies | 40% ± 24% | |
retinal cone cell | 6 studies | 71% ± 31% | |
retinal rod cell | 6 studies | 66% ± 36% | |
endothelial cell | 5 studies | 35% ± 16% | |
interneuron | 5 studies | 51% ± 18% | |
microglial cell | 5 studies | 47% ± 23% | |
oligodendrocyte | 5 studies | 43% ± 25% | |
neuron | 4 studies | 22% ± 6% | |
fibroblast | 4 studies | 20% ± 4% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 72% ± 9% | |
GABAergic interneuron | 3 studies | 32% ± 8% | |
granule cell | 3 studies | 50% ± 29% | |
GABAergic amacrine cell | 3 studies | 37% ± 14% | |
retinal ganglion cell | 3 studies | 31% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 98% | 669.65 | 2602 / 2642 | 80% | 13.57 | 567 / 705 |
adrenal gland | 100% | 597.21 | 257 / 258 | 26% | 0.83 | 59 / 230 |
lung | 88% | 414.02 | 511 / 578 | 2% | 0.06 | 23 / 1155 |
spleen | 33% | 41.13 | 80 / 241 | 0% | 0 | 0 / 0 |
kidney | 22% | 28.67 | 20 / 89 | 0% | 0.01 | 3 / 901 |
heart | 19% | 27.21 | 160 / 861 | 0% | 0 | 0 / 0 |
intestine | 6% | 5.90 | 55 / 966 | 0% | 0 | 0 / 527 |
ovary | 0% | 0 | 0 / 180 | 6% | 0.15 | 24 / 430 |
bladder | 5% | 3.38 | 1 / 21 | 1% | 0.05 | 3 / 504 |
skin | 2% | 2.56 | 45 / 1809 | 3% | 0.07 | 12 / 472 |
uterus | 1% | 3.11 | 2 / 170 | 3% | 0.07 | 12 / 459 |
thymus | 1% | 1.31 | 9 / 653 | 2% | 0.04 | 13 / 605 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.31 | 1 / 29 |
stomach | 1% | 1.14 | 4 / 359 | 1% | 0.02 | 4 / 286 |
esophagus | 0% | 0.35 | 7 / 1445 | 2% | 0.52 | 3 / 183 |
pancreas | 0% | 0 | 0 / 328 | 2% | 0.07 | 3 / 178 |
blood vessel | 1% | 1.48 | 18 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.04 | 1 / 80 |
breast | 0% | 0.35 | 2 / 459 | 0% | 0.01 | 5 / 1118 |
peripheral blood | 0% | 0.47 | 4 / 929 | 0% | 0 | 0 / 0 |
adipose | 0% | 0.47 | 5 / 1204 | 0% | 0 | 0 / 0 |
prostate | 0% | 0.40 | 1 / 245 | 0% | 0 | 0 / 502 |
liver | 0% | 0 | 0 / 226 | 0% | 0.00 | 1 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045494 | Biological process | photoreceptor cell maintenance |
GO_0007605 | Biological process | sensory perception of sound |
GO_0050957 | Biological process | equilibrioception |
GO_0048839 | Biological process | inner ear development |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0007155 | Biological process | cell adhesion |
GO_0050953 | Biological process | sensory perception of light stimulus |
GO_0032420 | Cellular component | stereocilium |
GO_0045202 | Cellular component | synapse |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | PCDH15 |
Protein name | Protocadherin related 15 Protocadherin-15 |
Synonyms | USH1F |
Description | FUNCTION: Calcium-dependent cell-adhesion protein. Essential for maintenance of normal retinal and cochlear function. |
Accessions | ENST00000642496.1 ENST00000409834.5 ENST00000644397.2 ENST00000395433.5 ENST00000373965.6 ENST00000613346.4 A2A3E4 ENST00000395442.5 A0A087WUC7 ENST00000395445.6 [Q96QU1-4] A0A087WZN9 A0A087WTR6 ENST00000458638.1 ENST00000320301.11 [Q96QU1-1] ENST00000395446.5 ENST00000373957.7 ENST00000395440.5 Q96QU1 A2A3E1 ENST00000395430.5 ENST00000414367.5 A0A087WXQ6 A0A2R8YEV2 A0A2R8Y6C0 A2A3E8 ENST00000437009.5 ENST00000373956.7 A9Z1W1 B7ZBT8 ENST00000618301.4 A2A3E6 ENST00000373955.5 [Q96QU1-3] A2A3D9 ENST00000495484.5 ENST00000615043.1 ENST00000616114.4 [Q96QU1-6] A0A087WZN4 A0A087WX70 ENST00000621708.4 ENST00000448885.5 E7EM97 E7EM53 ENST00000361849.7 A2A3D8 ENST00000613657.6 E7EMG8 ENST00000617271.4 A2A3E5 A2A3E7 A0A087X1T6 |