Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 10 studies | 24% ± 5% | |
retinal cone cell | 9 studies | 67% ± 20% | |
retinal rod cell | 9 studies | 53% ± 18% | |
neuron | 6 studies | 51% ± 25% | |
oligodendrocyte precursor cell | 6 studies | 31% ± 5% | |
retinal bipolar neuron | 5 studies | 52% ± 23% | |
OFF-bipolar cell | 4 studies | 29% ± 12% | |
ON-bipolar cell | 4 studies | 35% ± 17% | |
glutamatergic neuron | 4 studies | 30% ± 11% | |
connective tissue cell | 3 studies | 19% ± 2% | |
endothelial cell | 3 studies | 23% ± 4% | |
retinal ganglion cell | 3 studies | 29% ± 5% | |
rod bipolar cell | 3 studies | 55% ± 13% | |
GABAergic neuron | 3 studies | 29% ± 10% | |
astrocyte | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 10187.46 | 2640 / 2642 | 100% | 136.36 | 705 / 705 |
prostate | 100% | 5990.22 | 245 / 245 | 99% | 38.47 | 499 / 502 |
uterus | 100% | 4198.09 | 170 / 170 | 98% | 36.99 | 448 / 459 |
skin | 99% | 2279.04 | 1793 / 1809 | 98% | 68.68 | 462 / 472 |
breast | 100% | 2956.18 | 459 / 459 | 97% | 27.19 | 1080 / 1118 |
bladder | 100% | 3832.05 | 21 / 21 | 96% | 36.34 | 484 / 504 |
ovary | 99% | 3324.86 | 179 / 180 | 96% | 40.73 | 412 / 430 |
intestine | 99% | 3202.13 | 956 / 966 | 96% | 25.81 | 507 / 527 |
thymus | 100% | 3689.90 | 650 / 653 | 95% | 24.19 | 575 / 605 |
stomach | 100% | 2684.35 | 359 / 359 | 94% | 24.55 | 270 / 286 |
lung | 99% | 3111.89 | 574 / 578 | 92% | 20.10 | 1062 / 1155 |
adrenal gland | 100% | 2523.12 | 258 / 258 | 91% | 51.94 | 209 / 230 |
esophagus | 91% | 2943.16 | 1315 / 1445 | 93% | 19.08 | 170 / 183 |
kidney | 98% | 2615.73 | 87 / 89 | 69% | 14.08 | 619 / 901 |
pancreas | 62% | 923.08 | 202 / 328 | 96% | 31.99 | 171 / 178 |
liver | 54% | 812.08 | 123 / 226 | 87% | 20.33 | 354 / 406 |
muscle | 100% | 8373.77 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.91 | 1 / 1 |
blood vessel | 99% | 3999.91 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 4421.84 | 855 / 861 | 0% | 0 | 0 / 0 |
adipose | 99% | 2560.95 | 1190 / 1204 | 0% | 0 | 0 / 0 |
spleen | 98% | 2222.92 | 237 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 17.96 | 40 / 45 |
eye | 0% | 0 | 0 / 0 | 83% | 23.19 | 66 / 80 |
lymph node | 0% | 0 | 0 / 0 | 79% | 16.10 | 23 / 29 |
peripheral blood | 20% | 266.45 | 183 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048025 | Biological process | negative regulation of mRNA splicing, via spliceosome |
GO_0043488 | Biological process | regulation of mRNA stability |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003723 | Molecular function | RNA binding |
GO_0003677 | Molecular function | DNA binding |
GO_0003730 | Molecular function | mRNA 3'-UTR binding |
GO_0003729 | Molecular function | mRNA binding |
Gene name | PCBP4 |
Protein name | Poly(RC) binding protein 4, isoform CRA_d (RNA binding protein MCG10) Poly(rC) binding protein 4 Poly(RC) binding protein 4, isoform CRA_a (RNA binding protein MCG10) Poly(rC)-binding protein 4 (Alpha-CP4) |
Synonyms | hCG_42594 |
Description | FUNCTION: Single-stranded nucleic acid binding protein that binds preferentially to oligo dC. . |
Accessions | F8WC71 ENST00000355852.6 [P57723-1] ENST00000497653.5 C9K0A2 ENST00000471622.5 ENST00000490063.5 Q9HCU2 ENST00000483411.5 P57723 ENST00000461544.2 C9J5V4 ENST00000461554.6 [P57723-1] C9J7A9 ENST00000466412.5 ENST00000428823.6 [P57723-2] C9JTY5 ENST00000468324.5 C9IZV9 C9JSA6 ENST00000489595.6 ENST00000322099.11 [P57723-1] ENST00000471308.5 C9J0A4 ENST00000484633.5 [P57723-2] C9JZY3 Q9GZT1 |