OPN1SW | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of OPN1SW at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	96.57	21 / 21	2%	0.03	8 / 504
lung	99%	70.67	571 / 578	3%	0.06	29 / 1155
prostate	98%	71.86	240 / 245	3%	0.26	13 / 502
blood vessel	100%	133.77	1334 / 1335	0%	0	0 / 0
intestine	98%	105.27	944 / 966	2%	0.03	9 / 527
uterus	97%	72.68	165 / 170	1%	0.04	6 / 459
adipose	98%	61.81	1184 / 1204	0%	0	0 / 0
spleen	97%	41.41	234 / 241	0%	0	0 / 0
adrenal gland	96%	40.52	248 / 258	1%	0.04	2 / 230
stomach	92%	59.36	332 / 359	4%	0.11	11 / 286
breast	95%	52.32	435 / 459	2%	0.03	17 / 1118
thymus	95%	47.78	622 / 653	1%	0.03	6 / 605
heart	95%	86.14	820 / 861	0%	0	0 / 0
brain	84%	31.00	2229 / 2642	8%	0.23	57 / 705
esophagus	89%	97.22	1281 / 1445	3%	0.06	5 / 183
skin	88%	50.97	1588 / 1809	2%	0.08	10 / 472
muscle	85%	33.74	679 / 803	0%	0	0 / 0
kidney	79%	22.82	70 / 89	3%	0.07	23 / 901
ovary	77%	34.12	138 / 180	1%	0.02	5 / 430
pancreas	60%	14.93	198 / 328	2%	0.05	4 / 178
liver	47%	12.03	106 / 226	1%	0.02	4 / 406
peripheral blood	19%	4.91	175 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	6%	0.52	5 / 80
tonsil	0%	0	0 / 0	2%	0.04	1 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007601	Biological process	visual perception
GO_0007602	Biological process	phototransduction
GO_0071482	Biological process	cellular response to light stimulus
GO_0007165	Biological process	signal transduction
GO_0007186	Biological process	G protein-coupled receptor signaling pathway
GO_0009584	Biological process	detection of visible light
GO_0071492	Biological process	cellular response to UV-A
GO_0120199	Cellular component	cone photoreceptor outer segment
GO_0005886	Cellular component	plasma membrane
GO_0001750	Cellular component	photoreceptor outer segment
GO_0048471	Cellular component	perinuclear region of cytoplasm
GO_0005654	Cellular component	nucleoplasm
GO_0001917	Cellular component	photoreceptor inner segment
GO_0045171	Cellular component	intercellular bridge
GO_0097381	Cellular component	photoreceptor disc membrane
GO_0005829	Cellular component	cytosol
GO_0038023	Molecular function	signaling receptor activity
GO_0008020	Molecular function	G protein-coupled photoreceptor activity
GO_0005515	Molecular function	protein binding

Gene name	OPN1SW
Protein name	Short-wave-sensitive opsin 1 (Blue cone photoreceptor pigment) (Blue-sensitive opsin) Short-wave-sensitive opsin 1 (Blue cone photoreceptor pigment) (Blue-sensitive opsin) (BOP)
Synonyms	BCP hCG_41660 tcag7.365
Description	FUNCTION: Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal (Probable). Required for the maintenance of cone outer segment organization in the ventral retina, but not essential for the maintenance of functioning cone photoreceptors (By similarity). Involved in ensuring correct abundance and localization of retinal membrane proteins (By similarity). May increase spectral sensitivity in dim light (By similarity). .
Accessions	P03999 Q0PJU0 ENST00000249389.3

OPN1SW report