Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 28% ± 12% | |
smooth muscle cell | 18 studies | 26% ± 10% | |
fibroblast | 17 studies | 22% ± 5% | |
pericyte | 14 studies | 25% ± 5% | |
ciliated cell | 13 studies | 32% ± 14% | |
macrophage | 13 studies | 26% ± 8% | |
glutamatergic neuron | 10 studies | 59% ± 24% | |
GABAergic neuron | 9 studies | 50% ± 25% | |
astrocyte | 9 studies | 26% ± 9% | |
epithelial cell | 8 studies | 40% ± 22% | |
monocyte | 8 studies | 23% ± 6% | |
microglial cell | 8 studies | 26% ± 9% | |
oligodendrocyte precursor cell | 8 studies | 24% ± 8% | |
endothelial cell of lymphatic vessel | 7 studies | 28% ± 7% | |
basal cell | 7 studies | 39% ± 18% | |
classical monocyte | 7 studies | 25% ± 11% | |
endothelial cell of artery | 7 studies | 21% ± 3% | |
respiratory goblet cell | 6 studies | 22% ± 6% | |
non-classical monocyte | 6 studies | 26% ± 13% | |
neuron | 6 studies | 40% ± 11% | |
goblet cell | 6 studies | 32% ± 22% | |
myeloid cell | 6 studies | 27% ± 8% | |
amacrine cell | 6 studies | 29% ± 8% | |
retinal cone cell | 6 studies | 26% ± 9% | |
dendritic cell | 6 studies | 23% ± 11% | |
oligodendrocyte | 6 studies | 25% ± 9% | |
club cell | 5 studies | 23% ± 6% | |
retinal bipolar neuron | 5 studies | 33% ± 11% | |
interneuron | 5 studies | 53% ± 24% | |
retinal ganglion cell | 5 studies | 42% ± 19% | |
retina horizontal cell | 5 studies | 25% ± 10% | |
cardiac muscle cell | 5 studies | 26% ± 3% | |
retinal rod cell | 5 studies | 23% ± 8% | |
secretory cell | 4 studies | 34% ± 12% | |
squamous epithelial cell | 4 studies | 33% ± 26% | |
granule cell | 4 studies | 38% ± 10% | |
platelet | 4 studies | 25% ± 7% | |
myofibroblast cell | 4 studies | 27% ± 6% | |
connective tissue cell | 4 studies | 23% ± 6% | |
alveolar macrophage | 4 studies | 29% ± 11% | |
conventional dendritic cell | 3 studies | 25% ± 8% | |
kidney loop of Henle epithelial cell | 3 studies | 22% ± 5% | |
GABAergic amacrine cell | 3 studies | 29% ± 15% | |
OFF-bipolar cell | 3 studies | 28% ± 11% | |
ON-bipolar cell | 3 studies | 48% ± 11% | |
glycinergic amacrine cell | 3 studies | 33% ± 14% | |
rod bipolar cell | 3 studies | 70% ± 13% | |
type I pneumocyte | 3 studies | 20% ± 2% | |
pancreatic A cell | 3 studies | 55% ± 22% | |
enteroendocrine cell | 3 studies | 31% ± 18% | |
transit amplifying cell | 3 studies | 31% ± 20% | |
mesothelial cell | 3 studies | 29% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 9321.82 | 1445 / 1445 | 100% | 95.26 | 183 / 183 |
ovary | 100% | 4870.71 | 180 / 180 | 100% | 74.32 | 430 / 430 |
stomach | 100% | 6290.54 | 359 / 359 | 100% | 83.70 | 286 / 286 |
breast | 100% | 5478.88 | 459 / 459 | 100% | 117.49 | 1116 / 1118 |
lung | 100% | 7026.43 | 577 / 578 | 100% | 109.90 | 1154 / 1155 |
intestine | 100% | 9671.54 | 966 / 966 | 100% | 85.20 | 525 / 527 |
prostate | 100% | 7451.73 | 244 / 245 | 100% | 104.96 | 501 / 502 |
uterus | 100% | 12280.34 | 170 / 170 | 99% | 99.20 | 456 / 459 |
kidney | 100% | 5104.08 | 89 / 89 | 99% | 99.83 | 895 / 901 |
bladder | 100% | 8484.71 | 21 / 21 | 99% | 81.55 | 499 / 504 |
thymus | 100% | 5950.33 | 651 / 653 | 99% | 106.62 | 598 / 605 |
brain | 97% | 10874.11 | 2564 / 2642 | 100% | 81.61 | 705 / 705 |
adrenal gland | 100% | 5587.02 | 257 / 258 | 97% | 126.66 | 224 / 230 |
skin | 100% | 6565.37 | 1805 / 1809 | 97% | 76.53 | 456 / 472 |
pancreas | 91% | 2531.38 | 298 / 328 | 99% | 104.99 | 176 / 178 |
liver | 74% | 1724.08 | 167 / 226 | 95% | 48.50 | 385 / 406 |
blood vessel | 100% | 14155.90 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 4376.21 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 93.28 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 48.29 | 1 / 1 |
adipose | 100% | 5187.72 | 1201 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 39.68 | 28 / 29 |
heart | 95% | 7242.36 | 821 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 39.57 | 72 / 80 |
muscle | 79% | 1702.90 | 636 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 69% | 2751.75 | 642 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1902683 | Biological process | regulation of receptor localization to synapse |
GO_0045743 | Biological process | positive regulation of fibroblast growth factor receptor signaling pathway |
GO_0007204 | Biological process | positive regulation of cytosolic calcium ion concentration |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0006874 | Biological process | intracellular calcium ion homeostasis |
GO_0048170 | Biological process | positive regulation of long-term neuronal synaptic plasticity |
GO_0001934 | Biological process | positive regulation of protein phosphorylation |
GO_1904861 | Biological process | excitatory synapse assembly |
GO_0060291 | Biological process | long-term synaptic potentiation |
GO_0010976 | Biological process | positive regulation of neuron projection development |
GO_0001818 | Biological process | negative regulation of cytokine production |
GO_0001772 | Cellular component | immunological synapse |
GO_0009986 | Cellular component | cell surface |
GO_0014069 | Cellular component | postsynaptic density |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0050839 | Molecular function | cell adhesion molecule binding |
GO_0005105 | Molecular function | type 1 fibroblast growth factor receptor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NPTN |
Protein name | Neuroplastin Neuroplastin (Stromal cell-derived receptor 1) (SDR-1) |
Synonyms | DKFZp566H1924 SDR1 SDFR1 |
Description | FUNCTION: Probable homophilic and heterophilic cell adhesion molecule involved in long term potentiation at hippocampal excitatory synapses through activation of p38MAPK. May also regulate neurite outgrowth by activating the FGFR1 signaling pathway. May play a role in synaptic plasticity (By similarity). Also acts as a chaperone for ATP2B1; stabilizes ATP2B1 and increases its ATPase activity . Promotes localization of XKR8 at the cell membrane . . |
Accessions | ENST00000563691.5 [Q9Y639-5] H3BQ94 H3BU51 ENST00000567198.1 ENST00000351217.10 [Q9Y639-1] Q9Y639 ENST00000565282.5 ENST00000565325.5 ENST00000345330.9 [Q9Y639-2] ENST00000562924.5 [Q9Y639-3] Q9UFM8 |