NOPCHAP1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
plasmacytoid dendritic cell	18 studies	39% ± 13%	Explore
conventional dendritic cell	13 studies	26% ± 9%	Explore
dendritic cell	9 studies	37% ± 22%	Explore
plasma cell	5 studies	34% ± 12%	Explore
epithelial cell	5 studies	39% ± 19%	Explore
macrophage	4 studies	21% ± 4%	Explore
hematopoietic precursor cell	3 studies	22% ± 5%	Explore
intestinal crypt stem cell	3 studies	19% ± 3%	Explore
glutamatergic neuron	3 studies	36% ± 12%	Explore
oligodendrocyte	3 studies	19% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	29% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	669.53	459 / 459	98%	2.06	1098 / 1118
brain	100%	935.15	2640 / 2642	98%	2.74	689 / 705
thymus	100%	1012.65	653 / 653	97%	2.34	586 / 605
prostate	100%	637.55	245 / 245	96%	1.72	484 / 502
stomach	100%	914.35	359 / 359	96%	2.32	274 / 286
uterus	100%	731.38	170 / 170	95%	2.29	438 / 459
lung	100%	521.07	576 / 578	95%	1.95	1096 / 1155
intestine	100%	731.96	966 / 966	94%	2.27	495 / 527
bladder	100%	627.10	21 / 21	92%	2.02	462 / 504
esophagus	100%	624.04	1445 / 1445	91%	1.89	166 / 183
pancreas	100%	1030.61	327 / 328	90%	1.67	160 / 178
ovary	100%	611.38	180 / 180	89%	1.76	381 / 430
skin	100%	726.60	1809 / 1809	87%	1.87	411 / 472
adrenal gland	100%	631.54	258 / 258	78%	1.33	180 / 230
kidney	100%	437.34	89 / 89	66%	0.99	591 / 901
liver	100%	439.50	226 / 226	64%	1.04	259 / 406
adipose	100%	674.38	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	3.77	29 / 29
spleen	100%	756.44	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	1.83	45 / 45
ureter	0%	0	0 / 0	100%	1.82	1 / 1
blood vessel	100%	527.84	1331 / 1335	0%	0	0 / 0
muscle	98%	359.87	790 / 803	0%	0	0 / 0
heart	97%	445.85	831 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	93%	2.31	74 / 80
peripheral blood	46%	473.28	423 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0