Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 5 studies | 32% ± 15% | |
endothelial cell | 4 studies | 17% ± 2% | |
epithelial cell | 4 studies | 25% ± 8% | |
GABAergic neuron | 3 studies | 32% ± 9% | |
neuron | 3 studies | 19% ± 4% | |
interneuron | 3 studies | 30% ± 14% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1488.03 | 1445 / 1445 | 100% | 22.16 | 183 / 183 |
ovary | 100% | 1614.94 | 180 / 180 | 100% | 14.67 | 430 / 430 |
stomach | 100% | 1241.68 | 359 / 359 | 100% | 15.50 | 286 / 286 |
intestine | 100% | 1604.64 | 966 / 966 | 100% | 12.40 | 526 / 527 |
breast | 100% | 1372.12 | 459 / 459 | 100% | 13.12 | 1114 / 1118 |
brain | 100% | 1203.15 | 2636 / 2642 | 100% | 13.07 | 704 / 705 |
bladder | 100% | 1571.24 | 21 / 21 | 100% | 12.75 | 502 / 504 |
prostate | 100% | 1491.62 | 245 / 245 | 100% | 12.05 | 500 / 502 |
uterus | 100% | 1813.44 | 170 / 170 | 100% | 14.86 | 457 / 459 |
pancreas | 100% | 1136.40 | 328 / 328 | 99% | 9.50 | 177 / 178 |
lung | 99% | 1189.28 | 575 / 578 | 100% | 14.32 | 1153 / 1155 |
thymus | 100% | 1301.29 | 653 / 653 | 99% | 11.08 | 599 / 605 |
skin | 100% | 1760.34 | 1809 / 1809 | 99% | 15.18 | 466 / 472 |
kidney | 100% | 1031.12 | 89 / 89 | 94% | 9.09 | 851 / 901 |
adrenal gland | 100% | 1509.04 | 258 / 258 | 89% | 7.87 | 205 / 230 |
liver | 100% | 936.02 | 226 / 226 | 88% | 5.48 | 356 / 406 |
adipose | 100% | 1347.42 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1085.75 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 20.55 | 29 / 29 |
muscle | 100% | 1369.81 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2983.79 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.65 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.30 | 1 / 1 |
heart | 99% | 834.88 | 856 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 8.26 | 77 / 80 |
peripheral blood | 78% | 670.53 | 729 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000448 | Biological process | cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0000460 | Biological process | maturation of 5.8S rRNA |
GO_0045111 | Cellular component | intermediate filament cytoskeleton |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005634 | Cellular component | nucleus |
GO_0046404 | Molecular function | ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity |
GO_0005515 | Molecular function | protein binding |
GO_0051731 | Molecular function | polynucleotide 5'-hydroxyl-kinase activity |
GO_0051736 | Molecular function | ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | NOL9 |
Protein name | Polynucleotide 5'-hydroxyl-kinase NOL9 (EC 2.7.1.78) (Nucleolar protein 9) |
Synonyms | |
Description | FUNCTION: Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of single-stranded and double-stranded RNA and DNA substrates . Involved in rRNA processing and its kinase activity is required for the processing of the 32S precursor into 5.8S and 28S rRNAs, more specifically for the generation of the major 5.8S(S) form . Required for the efficient pre-rRNA processing of internal transcribed spacer 2 (ITS2) . Associates with LAS1L to form an ITS2 pre-rRNA endonuclease-kinase complex and is responsible for the transport of this complex into the nucleolus . . |
Accessions | ENST00000377705.6 Q5SY16 |