Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 21% ± 5% | |
glutamatergic neuron | 4 studies | 41% ± 14% | |
astrocyte | 4 studies | 25% ± 8% | |
GABAergic neuron | 3 studies | 38% ± 10% | |
oligodendrocyte | 3 studies | 16% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 3471.85 | 459 / 459 | 100% | 60.15 | 1118 / 1118 |
esophagus | 100% | 2984.89 | 1445 / 1445 | 100% | 53.41 | 183 / 183 |
prostate | 100% | 3233.07 | 245 / 245 | 100% | 38.35 | 502 / 502 |
skin | 100% | 4824.65 | 1809 / 1809 | 100% | 56.38 | 472 / 472 |
stomach | 100% | 2318.74 | 359 / 359 | 100% | 53.81 | 286 / 286 |
lung | 100% | 2602.18 | 578 / 578 | 100% | 48.88 | 1154 / 1155 |
thymus | 100% | 3112.68 | 653 / 653 | 100% | 34.09 | 604 / 605 |
intestine | 100% | 2802.92 | 966 / 966 | 100% | 58.42 | 526 / 527 |
bladder | 100% | 3313.76 | 21 / 21 | 100% | 49.45 | 503 / 504 |
uterus | 100% | 3624.61 | 170 / 170 | 100% | 43.92 | 458 / 459 |
kidney | 100% | 2149.37 | 89 / 89 | 100% | 30.65 | 898 / 901 |
pancreas | 100% | 2078.21 | 328 / 328 | 99% | 33.58 | 177 / 178 |
ovary | 100% | 3741.48 | 180 / 180 | 99% | 39.39 | 427 / 430 |
brain | 99% | 2357.83 | 2623 / 2642 | 100% | 42.37 | 705 / 705 |
liver | 100% | 1607.44 | 225 / 226 | 98% | 21.39 | 397 / 406 |
adrenal gland | 100% | 3439.58 | 258 / 258 | 97% | 24.35 | 222 / 230 |
adipose | 100% | 3258.69 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2456.87 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 55.55 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 77.47 | 29 / 29 |
muscle | 100% | 2446.68 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3542.89 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 40.71 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 14.35 | 1 / 1 |
heart | 98% | 1694.31 | 840 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 80% | 2977.70 | 744 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000154 | Biological process | rRNA modification |
GO_0051391 | Biological process | tRNA acetylation |
GO_0006417 | Biological process | regulation of translation |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0032211 | Biological process | negative regulation of telomere maintenance via telomerase |
GO_0010824 | Biological process | regulation of centrosome duplication |
GO_0045727 | Biological process | positive regulation of translation |
GO_0006473 | Biological process | protein acetylation |
GO_1904812 | Biological process | rRNA acetylation involved in maturation of SSU-rRNA |
GO_0005730 | Cellular component | nucleolus |
GO_0030496 | Cellular component | midbody |
GO_0016020 | Cellular component | membrane |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005697 | Cellular component | telomerase holoenzyme complex |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0005634 | Cellular component | nucleus |
GO_0070182 | Molecular function | DNA polymerase binding |
GO_1990883 | Molecular function | rRNA cytidine N-acetyltransferase activity |
GO_0051392 | Molecular function | tRNA N-acetyltransferase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0003723 | Molecular function | RNA binding |
GO_0000049 | Molecular function | tRNA binding |
GO_0008080 | Molecular function | N-acetyltransferase activity |
GO_0106162 | Molecular function | mRNA N-acetyltransferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | NAT10 |
Protein name | RNA cytidine acetyltransferase (EC 2.3.1.-) (18S rRNA cytosine acetyltransferase) (N-acetyltransferase 10) (N-acetyltransferase-like protein) (hALP) N-acetyltransferase 10 NAT10 protein |
Synonyms | KIAA1709 ALP |
Description | FUNCTION: RNA cytidine acetyltransferase that catalyzes the formation of N(4)-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs . Catalyzes ac4C modification of a broad range of mRNAs, enhancing mRNA stability and translation . mRNA ac4C modification is frequently present within wobble cytidine sites and promotes translation efficiency . Mediates the formation of ac4C at position 1842 in 18S rRNA . May also catalyze the formation of ac4C at position 1337 in 18S rRNA (By similarity). Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis . Catalyzes the formation of ac4C in serine and leucine tRNAs (By similarity). Requires the tRNA-binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation . In addition to RNA acetyltransferase activity, also able to acetylate lysine residues of proteins, such as histones, microtubules, p53/TP53 and MDM2, in vitro . The relevance of the protein lysine acetyltransferase activity is however unsure in vivo . Activates telomerase activity by stimulating the transcription of TERT, and may also regulate telomerase function by affecting the balance of telomerase subunit assembly, disassembly, and localization . Involved in the regulation of centrosome duplication by acetylating CENATAC during mitosis, promoting SASS6 proteasome degradation . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . |
Accessions | E9PJN6 ENST00000529523.5 ENST00000257829.8 [Q9H0A0-1] ENST00000531159.6 [Q9H0A0-2] E9PMU0 Q05CW7 ENST00000527971.5 Q9H0A0 |