Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 8 studies | 26% ± 8% | |
epithelial cell | 7 studies | 33% ± 20% | |
type I pneumocyte | 6 studies | 36% ± 12% | |
squamous epithelial cell | 4 studies | 46% ± 16% | |
Mueller cell | 4 studies | 33% ± 11% | |
retinal cone cell | 4 studies | 40% ± 16% | |
retinal rod cell | 4 studies | 53% ± 15% | |
club cell | 4 studies | 18% ± 2% | |
mesothelial cell | 3 studies | 30% ± 11% | |
respiratory goblet cell | 3 studies | 28% ± 9% | |
GABAergic neuron | 3 studies | 41% ± 11% | |
enterocyte | 3 studies | 22% ± 2% | |
goblet cell | 3 studies | 39% ± 29% | |
type II pneumocyte | 3 studies | 20% ± 4% | |
transit amplifying cell | 3 studies | 35% ± 26% | |
interneuron | 3 studies | 29% ± 3% | |
mucus secreting cell | 3 studies | 27% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
eye | 4 studies | 33% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 99% | 1739.36 | 326 / 328 | 95% | 16.02 | 169 / 178 |
prostate | 98% | 2066.33 | 239 / 245 | 96% | 16.81 | 484 / 502 |
thymus | 100% | 4607.03 | 652 / 653 | 93% | 26.44 | 561 / 605 |
kidney | 100% | 2878.49 | 89 / 89 | 89% | 18.59 | 801 / 901 |
lung | 94% | 2017.03 | 544 / 578 | 89% | 15.38 | 1029 / 1155 |
stomach | 77% | 1705.81 | 277 / 359 | 98% | 32.94 | 281 / 286 |
liver | 100% | 1555.58 | 225 / 226 | 70% | 7.52 | 283 / 406 |
breast | 60% | 1158.72 | 274 / 459 | 96% | 27.81 | 1077 / 1118 |
intestine | 52% | 2852.52 | 498 / 966 | 98% | 32.95 | 519 / 527 |
esophagus | 51% | 2245.59 | 732 / 1445 | 92% | 23.72 | 168 / 183 |
bladder | 43% | 847.52 | 9 / 21 | 85% | 18.46 | 429 / 504 |
skin | 72% | 3303.05 | 1305 / 1809 | 31% | 4.60 | 144 / 472 |
uterus | 18% | 239.03 | 30 / 170 | 78% | 13.42 | 356 / 459 |
ovary | 7% | 42.93 | 12 / 180 | 87% | 11.87 | 376 / 430 |
tonsil | 0% | 0 | 0 / 0 | 89% | 19.48 | 40 / 45 |
adrenal gland | 34% | 233.66 | 88 / 258 | 13% | 1.71 | 30 / 230 |
adipose | 37% | 379.63 | 444 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 31% | 433.60 | 416 / 1335 | 0% | 0 | 0 / 0 |
brain | 11% | 87.16 | 295 / 2642 | 10% | 0.98 | 74 / 705 |
heart | 17% | 138.75 | 147 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 10% | 0.74 | 8 / 80 |
spleen | 9% | 55.02 | 21 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 2.27 | 1 / 29 |
peripheral blood | 2% | 15.56 | 20 / 929 | 0% | 0 | 0 / 0 |
muscle | 0% | 2.73 | 3 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0003091 | Biological process | renal water homeostasis |
GO_0030050 | Biological process | vesicle transport along actin filament |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0016197 | Biological process | endosomal transport |
GO_0007015 | Biological process | actin filament organization |
GO_0015031 | Biological process | protein transport |
GO_0016020 | Cellular component | membrane |
GO_0055037 | Cellular component | recycling endosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0032991 | Cellular component | protein-containing complex |
GO_0045179 | Cellular component | apical cortex |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005737 | Cellular component | cytoplasm |
GO_0031982 | Cellular component | vesicle |
GO_0030659 | Cellular component | cytoplasmic vesicle membrane |
GO_0016459 | Cellular component | myosin complex |
GO_0051015 | Molecular function | actin filament binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0000146 | Molecular function | microfilament motor activity |
GO_0005524 | Molecular function | ATP binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | MYO5B |
Protein name | Myosin 5B Unconventional myosin-Vb Myosin VB |
Synonyms | KIAA1119 |
Description | FUNCTION: May be involved in vesicular trafficking via its association with the CART complex. The CART complex is necessary for efficient transferrin receptor recycling but not for EGFR degradation. Required in a complex with RAB11A and RAB11FIP2 for the transport of NPC1L1 to the plasma membrane. Together with RAB11A participates in CFTR trafficking to the plasma membrane and TF (transferrin) recycling in nonpolarized cells. Together with RAB11A and RAB8A participates in epithelial cell polarization. Together with RAB25 regulates transcytosis. Required for proper localization of bile salt export pump ABCB11 at the apical/canalicular plasma membrane of hepatocytes . . |
Accessions | Q7Z7A5 A0A8V8TKV2 ENST00000592688.1 [Q9ULV0-3] ENST00000285039.12 [Q9ULV0-1] A0A8V8TM52 ENST00000697217.1 Q9ULV0 A0A0A0MR36 ENST00000697219.1 ENST00000324581.10 |