Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 39 studies | 40% ± 16% | |
pericyte | 36 studies | 58% ± 19% | |
smooth muscle cell | 30 studies | 52% ± 23% | |
connective tissue cell | 15 studies | 44% ± 16% | |
astrocyte | 13 studies | 30% ± 11% | |
myofibroblast cell | 12 studies | 35% ± 18% | |
endothelial cell | 12 studies | 30% ± 11% | |
retinal cone cell | 8 studies | 36% ± 19% | |
retinal rod cell | 8 studies | 59% ± 11% | |
basal cell | 6 studies | 37% ± 19% | |
adventitial cell | 5 studies | 42% ± 14% | |
progenitor cell | 4 studies | 22% ± 3% | |
epithelial cell | 4 studies | 38% ± 13% | |
cardiac muscle cell | 4 studies | 25% ± 3% | |
muscle cell | 4 studies | 48% ± 19% | |
abnormal cell | 3 studies | 28% ± 5% | |
glial cell | 3 studies | 28% ± 8% | |
progenitor cell of mammary luminal epithelium | 3 studies | 57% ± 24% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 23138.64 | 180 / 180 | 99% | 153.21 | 425 / 430 |
skin | 96% | 14670.57 | 1745 / 1809 | 99% | 320.12 | 469 / 472 |
breast | 100% | 26452.84 | 459 / 459 | 93% | 97.54 | 1043 / 1118 |
thymus | 96% | 10154.83 | 628 / 653 | 96% | 129.63 | 581 / 605 |
lung | 99% | 14664.23 | 570 / 578 | 92% | 51.12 | 1062 / 1155 |
prostate | 96% | 14388.40 | 236 / 245 | 90% | 46.91 | 454 / 502 |
uterus | 100% | 36032.39 | 170 / 170 | 82% | 60.59 | 378 / 459 |
intestine | 94% | 11515.21 | 908 / 966 | 83% | 42.97 | 436 / 527 |
bladder | 100% | 17436.24 | 21 / 21 | 76% | 43.51 | 385 / 504 |
esophagus | 89% | 18924.03 | 1286 / 1445 | 84% | 48.46 | 153 / 183 |
adrenal gland | 90% | 8839.88 | 231 / 258 | 77% | 47.15 | 178 / 230 |
stomach | 63% | 10498.74 | 225 / 359 | 84% | 49.77 | 241 / 286 |
brain | 26% | 1556.70 | 677 / 2642 | 95% | 54.63 | 668 / 705 |
kidney | 57% | 5787.79 | 51 / 89 | 61% | 35.70 | 554 / 901 |
pancreas | 7% | 441.02 | 24 / 328 | 95% | 81.64 | 169 / 178 |
blood vessel | 100% | 125311.76 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 265.65 | 80 / 80 |
adipose | 100% | 24678.11 | 1203 / 1204 | 0% | 0 | 0 / 0 |
heart | 100% | 22847.46 | 857 / 861 | 0% | 0 | 0 / 0 |
muscle | 99% | 18364.58 | 795 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 91% | 44.38 | 41 / 45 |
lymph node | 0% | 0 | 0 / 0 | 86% | 28.52 | 25 / 29 |
spleen | 48% | 3163.80 | 115 / 241 | 0% | 0 | 0 / 0 |
liver | 0% | 21.00 | 1 / 226 | 23% | 8.54 | 95 / 406 |
peripheral blood | 6% | 348.51 | 53 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001525 | Biological process | angiogenesis |
GO_0043277 | Biological process | apoptotic cell clearance |
GO_0007338 | Biological process | single fertilization |
GO_0007155 | Biological process | cell adhesion |
GO_0002080 | Cellular component | acrosomal membrane |
GO_0005615 | Cellular component | extracellular space |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0070062 | Cellular component | extracellular exosome |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_1903561 | Cellular component | extracellular vesicle |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0016020 | Cellular component | membrane |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0001786 | Molecular function | phosphatidylserine binding |
GO_0005178 | Molecular function | integrin binding |
Gene name | MFGE8 |
Protein name | Lactadherin (Breast epithelial antigen BA46) (HMFG) (MFGM) (Milk fat globule-EGF factor 8) (MFG-E8) (SED1) [Cleaved into: Lactadherin short form; Medin] Milk fat globule EGF and factor V/VIII domain containing |
Synonyms | |
Description | FUNCTION: Plays an important role in the maintenance of intestinal epithelial homeostasis and the promotion of mucosal healing. Promotes VEGF-dependent neovascularization (By similarity). Contributes to phagocytic removal of apoptotic cells in many tissues. Specific ligand for the alpha-v/beta-3 and alpha-v/beta-5 receptors. Also binds to phosphatidylserine-enriched cell surfaces in a receptor-independent manner. Zona pellucida-binding protein which may play a role in gamete interaction. .; FUNCTION: [Medin]: Main constituent of aortic medial amyloid. . |
Accessions | Q08431 A0A8Q3SIZ9 H0YKS8 ENST00000542878.5 [Q08431-4] A0A8Q3SIX6 ENST00000558018.5 A0A8Q3SI86 ENST00000695566.1 [Q08431-2] A0A8Q3SIU8 ENST00000695774.1 ENST00000695568.1 ENST00000268150.13 [Q08431-1] ENST00000695569.1 A0A8Q3WKS4 ENST00000558029.6 ENST00000268151.11 [Q08431-3] H0YKB5 ENST00000566497.5 [Q08431-1] ENST00000695570.1 ENST00000695567.1 |