Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 6 studies | 21% ± 5% | |
glutamatergic neuron | 5 studies | 37% ± 14% | |
B cell | 4 studies | 25% ± 5% | |
epithelial cell | 4 studies | 38% ± 7% | |
fibroblast | 4 studies | 17% ± 3% | |
astrocyte | 4 studies | 22% ± 5% | |
CD4-positive, alpha-beta T cell | 3 studies | 25% ± 6% | |
retinal bipolar neuron | 3 studies | 23% ± 5% | |
ciliated cell | 3 studies | 23% ± 5% | |
GABAergic neuron | 3 studies | 33% ± 6% | |
oligodendrocyte precursor cell | 3 studies | 21% ± 4% | |
basal cell | 3 studies | 29% ± 5% | |
neuron | 3 studies | 22% ± 5% | |
interneuron | 3 studies | 31% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1052.35 | 459 / 459 | 100% | 13.21 | 1118 / 1118 |
esophagus | 100% | 930.95 | 1445 / 1445 | 100% | 11.94 | 183 / 183 |
ovary | 100% | 1142.42 | 180 / 180 | 100% | 11.70 | 430 / 430 |
skin | 100% | 1370.86 | 1809 / 1809 | 100% | 11.41 | 472 / 472 |
uterus | 100% | 1121.84 | 170 / 170 | 100% | 16.78 | 459 / 459 |
thymus | 100% | 990.39 | 653 / 653 | 100% | 13.22 | 604 / 605 |
lung | 100% | 877.35 | 577 / 578 | 100% | 13.16 | 1155 / 1155 |
prostate | 100% | 868.99 | 245 / 245 | 100% | 9.61 | 501 / 502 |
kidney | 100% | 646.20 | 89 / 89 | 100% | 8.75 | 899 / 901 |
pancreas | 100% | 484.93 | 327 / 328 | 100% | 11.15 | 178 / 178 |
brain | 100% | 751.60 | 2632 / 2642 | 100% | 10.95 | 705 / 705 |
bladder | 100% | 914.57 | 21 / 21 | 100% | 13.13 | 502 / 504 |
liver | 100% | 545.44 | 226 / 226 | 99% | 7.13 | 403 / 406 |
adrenal gland | 100% | 944.51 | 258 / 258 | 99% | 12.54 | 228 / 230 |
stomach | 100% | 693.93 | 359 / 359 | 99% | 10.13 | 282 / 286 |
intestine | 100% | 875.29 | 966 / 966 | 98% | 11.12 | 519 / 527 |
adipose | 100% | 1003.61 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 945.25 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16.85 | 29 / 29 |
spleen | 100% | 1081.93 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.81 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.29 | 1 / 1 |
muscle | 100% | 891.84 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 604.99 | 848 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 6.76 | 77 / 80 |
peripheral blood | 95% | 850.55 | 879 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051123 | Biological process | RNA polymerase II preinitiation complex assembly |
GO_0016567 | Biological process | protein ubiquitination |
GO_0060261 | Biological process | positive regulation of transcription initiation by RNA polymerase II |
GO_0035019 | Biological process | somatic stem cell population maintenance |
GO_0032968 | Biological process | positive regulation of transcription elongation by RNA polymerase II |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000151 | Cellular component | ubiquitin ligase complex |
GO_0016592 | Cellular component | mediator complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0016020 | Cellular component | membrane |
GO_0070847 | Cellular component | core mediator complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0001223 | Molecular function | transcription coactivator binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | MED6 |
Protein name | Mediator of RNA polymerase II transcription subunit 6 (Mediator complex subunit 6) Mediator of RNA polymerase II transcription subunit 6 (Activator-recruited cofactor 33 kDa component) (ARC33) (Mediator complex subunit 6) (hMed6) (Renal carcinoma antigen NY-REN-28) |
Synonyms | ARC33 |
Description | FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. . FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. . FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. . FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. . |
Accessions | ENST00000615788.4 ENST00000256379.10 [O75586-1] A0A087WYL7 B4DTY4 O75586 ENST00000440435.2 [O75586-3] ENST00000554963.5 G3V4A5 ENST00000430055.6 [O75586-2] |