Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 20 studies | 24% ± 8% | |
connective tissue cell | 10 studies | 25% ± 6% | |
oligodendrocyte precursor cell | 10 studies | 35% ± 17% | |
endothelial cell | 9 studies | 20% ± 4% | |
oligodendrocyte | 7 studies | 29% ± 11% | |
adipocyte | 6 studies | 22% ± 5% | |
retinal cone cell | 5 studies | 35% ± 16% | |
GABAergic neuron | 4 studies | 23% ± 5% | |
glial cell | 4 studies | 47% ± 15% | |
Schwann cell | 4 studies | 37% ± 20% | |
astrocyte | 3 studies | 35% ± 12% | |
retinal rod cell | 3 studies | 22% ± 2% | |
glutamatergic neuron | 3 studies | 22% ± 4% | |
ependymal cell | 3 studies | 34% ± 17% | |
myoepithelial cell | 3 studies | 29% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 27% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 11835.02 | 245 / 245 | 98% | 52.95 | 494 / 502 |
ovary | 100% | 17931.29 | 180 / 180 | 89% | 27.40 | 381 / 430 |
thymus | 100% | 19003.34 | 652 / 653 | 85% | 66.92 | 517 / 605 |
uterus | 100% | 20500.26 | 170 / 170 | 78% | 29.58 | 356 / 459 |
intestine | 100% | 8807.75 | 963 / 966 | 72% | 18.58 | 381 / 527 |
esophagus | 90% | 5000.94 | 1298 / 1445 | 74% | 21.36 | 136 / 183 |
kidney | 88% | 3950.34 | 78 / 89 | 76% | 19.63 | 688 / 901 |
bladder | 100% | 16351.00 | 21 / 21 | 60% | 16.95 | 304 / 504 |
breast | 99% | 6178.61 | 453 / 459 | 60% | 16.90 | 672 / 1118 |
adrenal gland | 87% | 3669.96 | 224 / 258 | 64% | 21.23 | 148 / 230 |
skin | 71% | 3311.97 | 1283 / 1809 | 71% | 32.98 | 337 / 472 |
brain | 32% | 755.63 | 839 / 2642 | 99% | 63.45 | 695 / 705 |
stomach | 57% | 2795.88 | 206 / 359 | 67% | 18.04 | 192 / 286 |
lung | 58% | 1657.34 | 336 / 578 | 63% | 18.66 | 731 / 1155 |
pancreas | 10% | 248.30 | 34 / 328 | 91% | 30.39 | 162 / 178 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.41 | 1 / 1 |
adipose | 99% | 6131.09 | 1186 / 1204 | 0% | 0 | 0 / 0 |
liver | 33% | 643.30 | 74 / 226 | 63% | 14.57 | 256 / 406 |
blood vessel | 92% | 4489.19 | 1227 / 1335 | 0% | 0 | 0 / 0 |
heart | 73% | 6941.90 | 630 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 73% | 18.90 | 58 / 80 |
tonsil | 0% | 0 | 0 / 0 | 60% | 15.84 | 27 / 45 |
lymph node | 0% | 0 | 0 / 0 | 10% | 1.17 | 3 / 29 |
muscle | 3% | 71.53 | 28 / 803 | 0% | 0 | 0 / 0 |
spleen | 2% | 43.70 | 6 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048678 | Biological process | response to axon injury |
GO_0031104 | Biological process | dendrite regeneration |
GO_0030198 | Biological process | extracellular matrix organization |
GO_0001764 | Biological process | neuron migration |
GO_0008150 | Biological process | biological_process |
GO_0007411 | Biological process | axon guidance |
GO_0008347 | Biological process | glial cell migration |
GO_0005604 | Cellular component | basement membrane |
GO_0120216 | Cellular component | matrilin complex |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0031012 | Cellular component | extracellular matrix |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | MATN2 |
Protein name | Matrilin 2 Matrilin-2 |
Synonyms | UNQ193/PRO219 |
Description | FUNCTION: Involved in matrix assembly. . |
Accessions | ENST00000521041.5 H0YBF2 H0YBM3 ENST00000524308.5 [O00339-3] H0YBV5 ENST00000254898.7 [O00339-1] ENST00000521689.5 [O00339-2] ENST00000522025.6 [O00339-4] ENST00000521952.5 ENST00000522270.5 O00339 ENST00000518154.5 ENST00000519582.5 ENST00000522135.5 ENST00000520016.5 [O00339-1] H0YBN2 E5RJM4 ENST00000519585.5 H0YBU5 ENST00000517321.5 H0YBJ4 H0YBD5 |