Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 9 studies | 41% ± 23% | |
astrocyte | 8 studies | 28% ± 12% | |
fibroblast | 8 studies | 27% ± 12% | |
microglial cell | 7 studies | 27% ± 6% | |
GABAergic neuron | 6 studies | 42% ± 17% | |
endothelial cell | 6 studies | 32% ± 10% | |
interneuron | 5 studies | 35% ± 16% | |
retinal cone cell | 5 studies | 31% ± 9% | |
macrophage | 5 studies | 29% ± 6% | |
granule cell | 4 studies | 29% ± 5% | |
endothelial cell of lymphatic vessel | 4 studies | 21% ± 6% | |
rod bipolar cell | 3 studies | 22% ± 5% | |
retinal pigment epithelial cell | 3 studies | 27% ± 9% | |
ependymal cell | 3 studies | 36% ± 18% | |
pericyte | 3 studies | 17% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 33% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2810.29 | 245 / 245 | 100% | 23.10 | 500 / 502 |
thymus | 100% | 4067.03 | 653 / 653 | 97% | 23.35 | 589 / 605 |
brain | 97% | 2386.45 | 2550 / 2642 | 98% | 25.44 | 688 / 705 |
adrenal gland | 100% | 2304.85 | 258 / 258 | 86% | 11.21 | 198 / 230 |
breast | 99% | 1495.82 | 455 / 459 | 81% | 8.30 | 909 / 1118 |
lung | 100% | 1964.91 | 577 / 578 | 66% | 4.79 | 763 / 1155 |
skin | 80% | 965.58 | 1456 / 1809 | 80% | 8.69 | 378 / 472 |
bladder | 100% | 2460.86 | 21 / 21 | 57% | 17.21 | 287 / 504 |
uterus | 100% | 2878.55 | 170 / 170 | 55% | 7.27 | 252 / 459 |
liver | 98% | 1846.80 | 221 / 226 | 53% | 4.93 | 215 / 406 |
ovary | 100% | 3121.16 | 180 / 180 | 50% | 3.28 | 216 / 430 |
kidney | 100% | 3455.25 | 89 / 89 | 46% | 5.68 | 416 / 901 |
stomach | 92% | 1416.88 | 331 / 359 | 51% | 4.47 | 147 / 286 |
esophagus | 91% | 1795.85 | 1314 / 1445 | 41% | 2.67 | 75 / 183 |
intestine | 94% | 1678.64 | 911 / 966 | 37% | 2.52 | 195 / 527 |
pancreas | 34% | 188.38 | 110 / 328 | 85% | 8.91 | 152 / 178 |
spleen | 100% | 2950.81 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 2389.28 | 1201 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1820.68 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 1148.89 | 827 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 61% | 6.49 | 49 / 80 |
lymph node | 0% | 0 | 0 / 0 | 59% | 3.56 | 17 / 29 |
tonsil | 0% | 0 | 0 / 0 | 47% | 2.24 | 21 / 45 |
muscle | 37% | 225.07 | 298 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 16% | 97.56 | 149 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0005975 | Biological process | carbohydrate metabolic process |
GO_1904382 | Biological process | mannose trimming involved in glycoprotein ERAD pathway |
GO_0006487 | Biological process | protein N-linked glycosylation |
GO_0000139 | Cellular component | Golgi membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0004571 | Molecular function | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | MAN1C1 |
Protein name | alpha-1,2-Mannosidase (EC 3.2.1.-) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC (EC 3.2.1.113) (HMIC) (Mannosidase alpha class 1C member 1) (Processing alpha-1,2-mannosidase IC) (Alpha-1,2-mannosidase IC) |
Synonyms | MAN1A3 MAN1C |
Description | FUNCTION: Involved in the maturation of Asn-linked oligosaccharides. Trim alpha-1,2-linked mannose residues from Man(9)GlcNAc(2) to produce first Man(8)GlcNAc(2) then Man(6)GlcNAc and a small amount of Man(5)GlcNAc. |
Accessions | A6NGN6 Q9NR34 ENST00000374329.1 ENST00000263979.7 ENST00000611903.4 A0A087WZ31 B1AJZ5 ENST00000374332.9 |