LRRC39 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal cone cell	7 studies	50% ± 16%	Explore
retinal rod cell	6 studies	42% ± 13%	Explore
cardiac muscle cell	5 studies	45% ± 8%	Explore
retina horizontal cell	4 studies	31% ± 14%	Explore
GABAergic neuron	4 studies	37% ± 16%	Explore
glutamatergic neuron	3 studies	32% ± 4%	Explore
interneuron	3 studies	48% ± 20%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
eye	5 studies	34% ± 11%	Explore
heart	3 studies	18% ± 2%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	90%	182.75	2387 / 2642	93%	3.32	653 / 705
thymus	88%	132.75	572 / 653	58%	1.30	349 / 605
skin	68%	101.01	1233 / 1809	76%	5.06	359 / 472
breast	87%	130.55	400 / 459	56%	0.99	623 / 1118
adrenal gland	99%	600.21	255 / 258	42%	1.88	96 / 230
uterus	78%	98.43	133 / 170	56%	2.69	259 / 459
prostate	89%	164.76	218 / 245	42%	1.14	213 / 502
ovary	81%	96.13	146 / 180	47%	0.87	200 / 430
kidney	67%	82.69	60 / 89	56%	1.69	502 / 901
lung	77%	109.79	446 / 578	45%	0.90	525 / 1155
bladder	71%	101.19	15 / 21	47%	0.92	235 / 504
esophagus	53%	67.66	766 / 1445	54%	1.07	99 / 183
muscle	100%	5957.69	803 / 803	0%	0	0 / 0
heart	99%	2926.28	854 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	99%	43.92	79 / 80
spleen	95%	150.55	230 / 241	0%	0	0 / 0
intestine	73%	98.41	705 / 966	22%	0.32	115 / 527
stomach	62%	72.35	222 / 359	26%	0.46	73 / 286
pancreas	33%	37.31	109 / 328	53%	0.89	94 / 178
adipose	83%	123.16	996 / 1204	0%	0	0 / 0
liver	54%	65.19	123 / 226	21%	0.57	84 / 406
blood vessel	66%	104.82	877 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	28%	0.39	8 / 29
tonsil	0%	0	0 / 0	27%	0.73	12 / 45
peripheral blood	11%	11.10	103 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1