Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 80% ± 21% | |
oligodendrocyte precursor cell | 15 studies | 91% ± 16% | |
oligodendrocyte | 14 studies | 70% ± 19% | |
glutamatergic neuron | 12 studies | 79% ± 18% | |
GABAergic neuron | 11 studies | 70% ± 27% | |
endothelial cell | 9 studies | 48% ± 23% | |
microglial cell | 9 studies | 50% ± 22% | |
adipocyte | 8 studies | 30% ± 14% | |
interneuron | 6 studies | 67% ± 23% | |
mast cell | 6 studies | 29% ± 7% | |
neuron | 5 studies | 52% ± 13% | |
macrophage | 4 studies | 41% ± 15% | |
granule cell | 4 studies | 71% ± 23% | |
retinal ganglion cell | 4 studies | 90% ± 12% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 80% ± 14% | |
GABAergic interneuron | 3 studies | 81% ± 11% | |
epithelial cell | 3 studies | 41% ± 20% | |
GABAergic amacrine cell | 3 studies | 44% ± 16% | |
Mueller cell | 3 studies | 35% ± 13% | |
OFF-bipolar cell | 3 studies | 62% ± 26% | |
ON-bipolar cell | 3 studies | 59% ± 29% | |
glycinergic amacrine cell | 3 studies | 34% ± 7% | |
amacrine cell | 3 studies | 52% ± 22% | |
ependymal cell | 3 studies | 72% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1793.78 | 2642 / 2642 | 99% | 13.44 | 696 / 705 |
thymus | 100% | 1687.65 | 650 / 653 | 27% | 1.06 | 166 / 605 |
breast | 73% | 469.16 | 335 / 459 | 22% | 3.09 | 243 / 1118 |
muscle | 84% | 570.70 | 678 / 803 | 0% | 0 | 0 / 0 |
adipose | 80% | 661.35 | 969 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 64% | 246.11 | 164 / 258 | 11% | 0.38 | 25 / 230 |
prostate | 32% | 104.16 | 79 / 245 | 3% | 0.05 | 17 / 502 |
stomach | 24% | 90.56 | 85 / 359 | 2% | 0.03 | 5 / 286 |
skin | 20% | 92.23 | 370 / 1809 | 5% | 0.20 | 23 / 472 |
ovary | 12% | 32.60 | 22 / 180 | 6% | 0.17 | 25 / 430 |
intestine | 16% | 51.71 | 159 / 966 | 0% | 0.01 | 2 / 527 |
esophagus | 6% | 19.00 | 81 / 1445 | 9% | 0.22 | 16 / 183 |
kidney | 8% | 18.56 | 7 / 89 | 5% | 0.14 | 48 / 901 |
lung | 1% | 2.42 | 6 / 578 | 9% | 0.20 | 101 / 1155 |
blood vessel | 10% | 30.61 | 128 / 1335 | 0% | 0 | 0 / 0 |
liver | 3% | 6.12 | 7 / 226 | 4% | 0.09 | 16 / 406 |
heart | 6% | 16.59 | 55 / 861 | 0% | 0 | 0 / 0 |
uterus | 1% | 2.61 | 1 / 170 | 5% | 0.09 | 25 / 459 |
tonsil | 0% | 0 | 0 / 0 | 4% | 0.10 | 2 / 45 |
bladder | 0% | 0 | 0 / 21 | 4% | 0.18 | 19 / 504 |
pancreas | 0% | 0.71 | 1 / 328 | 1% | 0.03 | 2 / 178 |
spleen | 0% | 2.80 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015031 | Biological process | protein transport |
GO_0006898 | Biological process | receptor-mediated endocytosis |
GO_0043235 | Cellular component | receptor complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0005041 | Molecular function | low-density lipoprotein particle receptor activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | LRP1B |
Protein name | Uncharacterized protein LRP1B Candidate tumor suppressor protein LDL receptor related protein 1B Alternative protein LRP1B Low-density lipoprotein receptor-related protein 1B (LRP-1B) (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) |
Synonyms | LRPDIT |
Description | FUNCTION: Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis. |
Accessions | Q53TB8 E7ERG8 Q53RG4 Q53S76 Q53RL0 Q580W7 Q53S73 Q8WY28 H0Y7T7 Q4ZFV5 ENST00000389484.8 ENST00000434794.1 ENST00000437977.5 Q53RA0 Q9NZR2 Q53QP5 L8ECI0 Q4ZG53 H7C0A8 Q8WY26 Q8WY27 Q53S26 ENST00000442974.1 Q53QM8 |