Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell of lymphatic vessel | 8 studies | 23% ± 5% | |
epithelial cell | 8 studies | 31% ± 13% | |
intestinal crypt stem cell | 5 studies | 29% ± 9% | |
transit amplifying cell | 5 studies | 21% ± 3% | |
goblet cell | 5 studies | 23% ± 7% | |
basal cell | 4 studies | 28% ± 16% | |
squamous epithelial cell | 3 studies | 38% ± 22% | |
progenitor cell | 3 studies | 23% ± 5% | |
endothelial cell | 3 studies | 19% ± 2% | |
ciliated cell | 3 studies | 21% ± 4% | |
oligodendrocyte precursor cell | 3 studies | 24% ± 4% | |
glutamatergic neuron | 3 studies | 27% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 3 studies | 18% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 96% | 3742.98 | 235 / 245 | 98% | 53.67 | 493 / 502 |
bladder | 86% | 1910.29 | 18 / 21 | 82% | 59.70 | 411 / 504 |
esophagus | 84% | 2604.33 | 1217 / 1445 | 77% | 39.12 | 141 / 183 |
intestine | 70% | 2962.69 | 677 / 966 | 90% | 86.19 | 473 / 527 |
brain | 89% | 2298.69 | 2347 / 2642 | 68% | 15.46 | 480 / 705 |
uterus | 73% | 694.03 | 124 / 170 | 75% | 30.08 | 344 / 459 |
thymus | 75% | 681.72 | 487 / 653 | 66% | 11.75 | 399 / 605 |
stomach | 62% | 426.75 | 221 / 359 | 78% | 68.48 | 222 / 286 |
lung | 77% | 900.13 | 443 / 578 | 62% | 22.82 | 718 / 1155 |
kidney | 75% | 935.39 | 67 / 89 | 49% | 8.30 | 442 / 901 |
ovary | 91% | 1217.68 | 163 / 180 | 33% | 8.34 | 141 / 430 |
pancreas | 65% | 415.82 | 212 / 328 | 37% | 10.47 | 66 / 178 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.74 | 1 / 1 |
skin | 87% | 3292.25 | 1577 / 1809 | 10% | 2.41 | 46 / 472 |
tonsil | 0% | 0 | 0 / 0 | 93% | 27.49 | 42 / 45 |
breast | 43% | 465.81 | 197 / 459 | 34% | 8.09 | 383 / 1118 |
adrenal gland | 17% | 117.68 | 43 / 258 | 40% | 5.51 | 93 / 230 |
heart | 19% | 151.60 | 160 / 861 | 0% | 0 | 0 / 0 |
liver | 8% | 61.01 | 17 / 226 | 6% | 0.66 | 23 / 406 |
blood vessel | 7% | 55.36 | 99 / 1335 | 0% | 0 | 0 / 0 |
adipose | 4% | 46.80 | 54 / 1204 | 0% | 0 | 0 / 0 |
muscle | 2% | 12.73 | 17 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.88 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
GO_0000902 | Biological process | cell morphogenesis |
GO_0048870 | Biological process | cell motility |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | LRATD1 |
Protein name | Protein LRATD1 (LRAT domain-containing 1) (Neurologic sensory protein 1) (NSE1) (Protein FAM84A) |
Synonyms | NSE1 FAM84A |
Description | FUNCTION: May play a role in cell morphology and motility. . |
Accessions | ENST00000295092.3 [Q96KN4-1] ENST00000331243.4 [Q96KN4-1] Q96KN4 |