Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 41% ± 18% | |
type I pneumocyte | 11 studies | 38% ± 13% | |
glutamatergic neuron | 11 studies | 53% ± 23% | |
type II pneumocyte | 10 studies | 44% ± 12% | |
oligodendrocyte precursor cell | 9 studies | 33% ± 14% | |
ciliated cell | 8 studies | 27% ± 11% | |
GABAergic neuron | 7 studies | 29% ± 11% | |
adipocyte | 6 studies | 29% ± 9% | |
neuron | 5 studies | 31% ± 11% | |
club cell | 5 studies | 47% ± 12% | |
endothelial cell | 3 studies | 34% ± 12% | |
GABAergic interneuron | 3 studies | 18% ± 1% | |
epithelial cell | 3 studies | 22% ± 5% | |
ependymal cell | 3 studies | 40% ± 17% | |
basal cell | 3 studies | 35% ± 14% | |
interneuron | 3 studies | 35% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 8351.51 | 651 / 653 | 92% | 102.05 | 554 / 605 |
brain | 88% | 9009.94 | 2334 / 2642 | 91% | 35.90 | 642 / 705 |
lung | 90% | 4611.10 | 519 / 578 | 50% | 20.25 | 581 / 1155 |
bladder | 86% | 7958.24 | 18 / 21 | 13% | 4.01 | 65 / 504 |
adipose | 95% | 3883.80 | 1148 / 1204 | 0% | 0 | 0 / 0 |
uterus | 79% | 3338.65 | 135 / 170 | 16% | 4.37 | 73 / 459 |
blood vessel | 84% | 2382.67 | 1118 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 73% | 1605.42 | 239 / 328 | 9% | 0.90 | 16 / 178 |
intestine | 76% | 7534.46 | 730 / 966 | 2% | 0.17 | 10 / 527 |
breast | 60% | 1865.76 | 277 / 459 | 10% | 2.10 | 108 / 1118 |
prostate | 58% | 1851.28 | 141 / 245 | 12% | 0.91 | 59 / 502 |
esophagus | 60% | 3038.43 | 870 / 1445 | 2% | 0.17 | 4 / 183 |
ovary | 17% | 295.49 | 31 / 180 | 25% | 5.49 | 109 / 430 |
stomach | 26% | 842.89 | 95 / 359 | 6% | 0.43 | 17 / 286 |
adrenal gland | 21% | 350.15 | 53 / 258 | 8% | 0.89 | 18 / 230 |
skin | 9% | 161.41 | 154 / 1809 | 5% | 0.90 | 23 / 472 |
heart | 12% | 172.80 | 100 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 4% | 1.28 | 2 / 45 |
peripheral blood | 4% | 95.13 | 41 / 929 | 0% | 0 | 0 / 0 |
kidney | 3% | 43.81 | 3 / 89 | 1% | 0.10 | 7 / 901 |
eye | 0% | 0 | 0 / 0 | 1% | 0.11 | 1 / 80 |
muscle | 1% | 15.26 | 9 / 803 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 0% | 0.02 | 1 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0035360 | Biological process | positive regulation of peroxisome proliferator activated receptor signaling pathway |
GO_0070373 | Biological process | negative regulation of ERK1 and ERK2 cascade |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_2000324 | Biological process | positive regulation of glucocorticoid receptor signaling pathway |
GO_0045600 | Biological process | positive regulation of fat cell differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | LMO3 |
Protein name | LIM domain only protein 3 LIM domain only protein 3 (LMO-3) (Neuronal-specific transcription factor DAT1) (Rhombotin-3) |
Synonyms | RHOM3 RBTN3 RBTNL2 |
Description | |
Accessions | ENST00000534946.5 [Q8TAP4-1] ENST00000538051.5 ENST00000535535.5 [Q8TAP4-1] C9JE61 ENST00000453727.6 ENST00000541846.5 [Q8TAP4-1] ENST00000546281.5 F5H2N9 ENST00000544754.1 ENST00000541295.5 [Q8TAP4-4] ENST00000537304.6 [Q8TAP4-1] F5H4K9 ENST00000539534.5 Q05D86 ENST00000541589.5 ENST00000539232.1 ENST00000546279.5 ENST00000354662.5 [Q8TAP4-1] Q8TAP4 ENST00000538020.1 ENST00000320122.10 [Q8TAP4-1] ENST00000261169.10 [Q8TAP4-3] ENST00000540848.5 [Q8TAP4-1] ENST00000441439.6 [Q8TAP4-1] ENST00000537757.5 ENST00000541764.5 F6TDU8 F5H655 ENST00000540445.5 [Q8TAP4-2] ENST00000424192.6 ENST00000396205.6 F5H4T0 F5GYZ6 ENST00000447609.5 [Q8TAP4-1] ENST00000545436.5 ENST00000540590.1 F5H3S4 F5GZR3 ENST00000536172.5 |