I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| retinal pigment epithelial cell | 4 studies | 30% ± 8% | |
| retina horizontal cell | 3 studies | 23% ± 10% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| retinal pigment epithelial cell | 4 studies | 30% ± 8% | |
| retina horizontal cell | 3 studies | 23% ± 10% |
Insufficient scRNA-seq data for expression of LMO1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 84% | 87.47 | 2222 / 2642 | 96% | 14.40 | 677 / 705 |
| muscle | 96% | 340.75 | 772 / 803 | 0% | 0 | 0 / 0 |
| skin | 71% | 229.99 | 1293 / 1809 | 14% | 1.16 | 66 / 472 |
| adrenal gland | 12% | 11.59 | 32 / 258 | 70% | 24.13 | 160 / 230 |
| pancreas | 40% | 19.46 | 130 / 328 | 41% | 2.23 | 73 / 178 |
| ovary | 4% | 1.48 | 8 / 180 | 58% | 3.08 | 250 / 430 |
| kidney | 37% | 34.29 | 33 / 89 | 17% | 0.94 | 152 / 901 |
| esophagus | 9% | 6.88 | 124 / 1445 | 29% | 1.44 | 53 / 183 |
| stomach | 28% | 30.03 | 100 / 359 | 9% | 1.38 | 27 / 286 |
| uterus | 1% | 0.25 | 1 / 170 | 37% | 3.41 | 168 / 459 |
| tonsil | 0% | 0 | 0 / 0 | 36% | 1.21 | 16 / 45 |
| spleen | 35% | 21.88 | 85 / 241 | 0% | 0 | 0 / 0 |
| heart | 30% | 16.08 | 254 / 861 | 0% | 0 | 0 / 0 |
| lung | 2% | 0.89 | 14 / 578 | 23% | 1.02 | 262 / 1155 |
| bladder | 14% | 8.95 | 3 / 21 | 8% | 0.54 | 38 / 504 |
| breast | 5% | 1.81 | 22 / 459 | 14% | 0.76 | 160 / 1118 |
| thymus | 3% | 0.96 | 21 / 653 | 14% | 1.84 | 83 / 605 |
| intestine | 3% | 2.45 | 31 / 966 | 4% | 0.14 | 23 / 527 |
| eye | 0% | 0 | 0 / 0 | 8% | 0.19 | 6 / 80 |
| adipose | 6% | 2.63 | 78 / 1204 | 0% | 0 | 0 / 0 |
| prostate | 4% | 1.22 | 9 / 245 | 2% | 0.03 | 8 / 502 |
| liver | 0% | 0 | 0 / 226 | 5% | 0.13 | 19 / 406 |
| blood vessel | 3% | 1.91 | 45 / 1335 | 0% | 0 | 0 / 0 |
| peripheral blood | 0% | 0.12 | 3 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
| GO_0046013 | Biological process | regulation of T cell homeostatic proliferation |
| GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005634 | Cellular component | nucleus |
| GO_0003713 | Molecular function | transcription coactivator activity |
| GO_0140297 | Molecular function | DNA-binding transcription factor binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0046872 | Molecular function | metal ion binding |
| Gene name | LMO1 |
| Protein name | LMO1 protein Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM domain only protein 1) (LMO-1) (T-cell translocation protein 1) LIM domain only 1 LIM domain only 1 protein |
| Synonyms | RBTN1 RHOM1 TTG1 |
| Description | FUNCTION: May be involved in gene regulation within neural lineage cells potentially by direct DNA binding or by binding to other transcription factors. . |
| Accessions | ENST00000335790.8 [P25800-1] E9PK83 ENST00000428101.6 [P25800-2] Q9H4D3 ENST00000534484.1 Q4VBC4 P25800 |
