Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 14 studies | 32% ± 13% | |
oligodendrocyte | 12 studies | 30% ± 11% | |
glutamatergic neuron | 10 studies | 50% ± 17% | |
neuron | 9 studies | 42% ± 12% | |
GABAergic neuron | 8 studies | 45% ± 19% | |
retina horizontal cell | 6 studies | 54% ± 19% | |
interneuron | 6 studies | 45% ± 22% | |
oligodendrocyte precursor cell | 6 studies | 26% ± 9% | |
amacrine cell | 5 studies | 51% ± 11% | |
retinal cone cell | 5 studies | 38% ± 14% | |
retinal rod cell | 5 studies | 22% ± 5% | |
retinal bipolar neuron | 4 studies | 48% ± 19% | |
granule cell | 4 studies | 26% ± 6% | |
OFF-bipolar cell | 4 studies | 44% ± 31% | |
ON-bipolar cell | 4 studies | 44% ± 31% | |
retinal ganglion cell | 4 studies | 90% ± 12% | |
Mueller cell | 4 studies | 23% ± 5% | |
pancreatic A cell | 3 studies | 39% ± 9% | |
type B pancreatic cell | 3 studies | 35% ± 13% | |
endothelial cell | 3 studies | 44% ± 19% | |
GABAergic interneuron | 3 studies | 42% ± 11% | |
rod bipolar cell | 3 studies | 46% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 65248.12 | 2641 / 2642 | 98% | 128.56 | 694 / 705 |
pancreas | 79% | 6287.10 | 259 / 328 | 28% | 6.74 | 49 / 178 |
eye | 0% | 0 | 0 / 0 | 83% | 17.38 | 66 / 80 |
adrenal gland | 7% | 826.34 | 19 / 258 | 69% | 109.36 | 159 / 230 |
prostate | 11% | 878.18 | 28 / 245 | 57% | 10.13 | 284 / 502 |
ovary | 0% | 0 | 0 / 180 | 63% | 22.51 | 269 / 430 |
heart | 23% | 1765.75 | 200 / 861 | 0% | 0 | 0 / 0 |
uterus | 0% | 0 | 0 / 170 | 20% | 7.38 | 92 / 459 |
lung | 0% | 0 | 0 / 578 | 17% | 6.24 | 199 / 1155 |
breast | 0% | 0 | 0 / 459 | 13% | 3.33 | 145 / 1118 |
skin | 0% | 2.85 | 1 / 1809 | 11% | 2.79 | 53 / 472 |
esophagus | 0% | 3.52 | 1 / 1445 | 7% | 2.40 | 12 / 183 |
bladder | 0% | 0 | 0 / 21 | 6% | 1.91 | 32 / 504 |
thymus | 0% | 0 | 0 / 653 | 5% | 1.33 | 32 / 605 |
intestine | 1% | 66.73 | 10 / 966 | 4% | 1.04 | 21 / 527 |
tonsil | 0% | 0 | 0 / 0 | 4% | 0.86 | 2 / 45 |
liver | 0% | 0 | 0 / 226 | 4% | 0.82 | 17 / 406 |
stomach | 0% | 16.52 | 1 / 359 | 3% | 1.66 | 10 / 286 |
kidney | 0% | 0 | 0 / 89 | 2% | 0.45 | 19 / 901 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0 | 0 / 1335 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0099519 | Biological process | dense core granule cytoskeletal transport |
GO_0008089 | Biological process | anterograde axonal transport |
GO_1990049 | Biological process | retrograde neuronal dense core vesicle transport |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0060998 | Biological process | regulation of dendritic spine development |
GO_0061001 | Biological process | regulation of dendritic spine morphogenesis |
GO_0007018 | Biological process | microtubule-based movement |
GO_1990048 | Biological process | anterograde neuronal dense core vesicle transport |
GO_0030705 | Biological process | cytoskeleton-dependent intracellular transport |
GO_0098992 | Cellular component | neuronal dense core vesicle |
GO_0005874 | Cellular component | microtubule |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0099012 | Cellular component | neuronal dense core vesicle membrane |
GO_0005871 | Cellular component | kinesin complex |
GO_0030425 | Cellular component | dendrite |
GO_0045202 | Cellular component | synapse |
GO_0030424 | Cellular component | axon |
GO_1904115 | Cellular component | axon cytoplasm |
GO_0008574 | Molecular function | plus-end-directed microtubule motor activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0003774 | Molecular function | cytoskeletal motor activity |
GO_0008017 | Molecular function | microtubule binding |
GO_0005524 | Molecular function | ATP binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | KIF1A |
Protein name | Kinesin-like protein KIF1A Kinesin family member 1A isoform B Kinesin family member 1A isoform D Kinesin family member 1A isoform A Kinesin family member 1A isoform C Kinesin-like protein Kinesin-like protein KIF1A (Axonal transporter of synaptic vesicles) (Microtubule-based motor KIF1A) (Unc-104- and KIF1A-related protein) (hUnc-104) Kinesin family member 1A |
Synonyms | ATSV C2orf20 |
Description | FUNCTION: Motor for anterograde axonal transport of synaptic vesicle precursors . Also required for neuronal dense core vesicles (DCVs) transport to the dendritic spines and axons. The interaction calcium-dependent with CALM1 increases vesicle motility and interaction with the scaffolding proteins PPFIA2 and TANC2 recruits DCVs to synaptic sites. . |
Accessions | C9JBH1 ENST00000675314.1 ENST00000498729.9 [Q12756-3] A0A3B3ITE5 ENST00000674907.1 ENST00000648364.1 Q12756 ENST00000647731.1 ENST00000674607.1 A0A6Q8PH56 ENST00000675940.1 ENST00000648129.1 ENST00000675152.1 A0A6Q8PFJ8 ENST00000648680.1 A0A3B3ITK3 A0A6H0DX63 A0A3B3ITF7 ENST00000674664.1 A0A6Q8PGE4 ENST00000649096.1 [Q12756-1] ENST00000428768.2 G1UI30 ENST00000648047.1 X5DRH9 ENST00000650130.1 A0A3B3IUA1 A0A3F2YNW9 H7C3Y8 X5D2X6 ENST00000649306.1 ENST00000404283.9 [Q12756-2] X5D7J0 A0A3B3ITW6 A0A6Q8PFR1 ENST00000647572.1 ENST00000674975.1 A0A6Q8PFE9 A0A3B3IU40 ENST00000431776.6 ENST00000320389.12 ENST00000647885.1 ENST00000448728.1 A0A6Q8PGW8 A0A3B3ITW4 ENST00000675126.1 A0A6Q8PFR5 ENST00000650053.1 [Q12756-1] A0A3B3IT28 A0A6Q8PHQ5 ENST00000675644.1 H7C0K6 A0A6Q8PFL2 ENST00000674793.1 ENST00000676050.1 ENST00000675932.1 X5D2L7 |