Insufficient scRNA-seq data for expression of KASH5 at single-cell level.
Insufficient scRNA-seq data for expression of KASH5 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 128.78 | 328 / 328 | 1% | 0.01 | 2 / 178 |
lung | 52% | 22.39 | 302 / 578 | 4% | 0.10 | 49 / 1155 |
spleen | 48% | 4.54 | 116 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 44% | 1.30 | 20 / 45 |
stomach | 40% | 4.86 | 145 / 359 | 2% | 0.03 | 7 / 286 |
skin | 31% | 3.76 | 552 / 1809 | 7% | 0.11 | 31 / 472 |
breast | 32% | 4.90 | 147 / 459 | 3% | 0.05 | 30 / 1118 |
liver | 26% | 3.76 | 59 / 226 | 4% | 0.09 | 16 / 406 |
uterus | 11% | 1.35 | 19 / 170 | 18% | 0.56 | 82 / 459 |
brain | 29% | 264.00 | 756 / 2642 | 0% | 0.00 | 2 / 705 |
adipose | 28% | 4.20 | 341 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 27% | 12.43 | 255 / 929 | 0% | 0 | 0 / 0 |
thymus | 22% | 3.57 | 146 / 653 | 0% | 0.01 | 3 / 605 |
prostate | 22% | 6.83 | 54 / 245 | 0% | 0 | 0 / 502 |
kidney | 17% | 1.65 | 15 / 89 | 1% | 0.02 | 5 / 901 |
intestine | 17% | 2.06 | 161 / 966 | 1% | 0.02 | 3 / 527 |
adrenal gland | 15% | 1.76 | 39 / 258 | 0% | 0.01 | 1 / 230 |
ovary | 8% | 1.17 | 14 / 180 | 5% | 0.10 | 22 / 430 |
bladder | 10% | 0.71 | 2 / 21 | 3% | 0.06 | 14 / 504 |
esophagus | 8% | 1.19 | 112 / 1445 | 1% | 0.01 | 1 / 183 |
blood vessel | 8% | 0.77 | 109 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.09 | 2 / 29 |
heart | 5% | 0.46 | 42 / 861 | 0% | 0 | 0 / 0 |
muscle | 4% | 0.81 | 33 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.03 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0034397 | Biological process | telomere localization |
GO_0090220 | Biological process | chromosome localization to nuclear envelope involved in homologous chromosome segregation |
GO_0007283 | Biological process | spermatogenesis |
GO_0051653 | Biological process | spindle localization |
GO_0051225 | Biological process | spindle assembly |
GO_0048477 | Biological process | oogenesis |
GO_0007015 | Biological process | actin filament organization |
GO_0045141 | Biological process | meiotic telomere clustering |
GO_0007129 | Biological process | homologous chromosome pairing at meiosis |
GO_0000800 | Cellular component | lateral element |
GO_0034993 | Cellular component | meiotic nuclear membrane microtubule tethering complex |
GO_0090619 | Cellular component | meiotic spindle pole |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0005640 | Cellular component | nuclear outer membrane |
GO_0070840 | Molecular function | dynein complex binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | KASH5 |
Protein name | KASH domain containing 5 Protein KASH5 (Coiled-coil domain-containing protein 155) (KASH domain-containing protein 5) |
Synonyms | CCDC155 |
Description | FUNCTION: As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning. Required for telomere attachment to nuclear envelope in the prophase of meiosis and for rapid telomere prophase movements implicating a SUN1/2:KASH5 LINC complex in which SUN1 and SUN2 seem to act at least partial redundantly. Required for homolog pairing during meiotic prophase in spermatocytes and probably oocytes. Essential for male and female gametogenesis. Recruits cytoplasmic dynein to telomere attachment sites at the nuclear envelope in spermatocytes. In oocytes is involved in meiotic resumption and spindle formation. . |
Accessions | ENST00000600570.1 ENST00000597993.5 M0QXW9 M0R1C7 ENST00000598730.5 M0QXT3 M0QZT9 ENST00000594043.5 ENST00000595828.5 M0QX09 Q8N6L0 M0QZW6 ENST00000447857.8 ENST00000594905.5 |