Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 29% ± 8% | |
glutamatergic neuron | 4 studies | 38% ± 10% | |
oligodendrocyte | 4 studies | 22% ± 3% | |
GABAergic neuron | 3 studies | 31% ± 6% | |
dendritic cell | 3 studies | 30% ± 5% | |
neuron | 3 studies | 23% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1053.00 | 459 / 459 | 100% | 33.93 | 1118 / 1118 |
esophagus | 100% | 853.01 | 1445 / 1445 | 100% | 21.21 | 183 / 183 |
intestine | 100% | 1018.81 | 966 / 966 | 100% | 23.60 | 527 / 527 |
ovary | 100% | 806.69 | 180 / 180 | 100% | 19.04 | 430 / 430 |
brain | 100% | 1397.74 | 2641 / 2642 | 100% | 27.41 | 705 / 705 |
stomach | 100% | 805.02 | 358 / 359 | 100% | 21.38 | 286 / 286 |
lung | 100% | 982.16 | 576 / 578 | 100% | 22.06 | 1155 / 1155 |
prostate | 100% | 918.60 | 245 / 245 | 100% | 23.27 | 500 / 502 |
uterus | 100% | 932.98 | 170 / 170 | 100% | 22.00 | 457 / 459 |
bladder | 100% | 900.05 | 21 / 21 | 99% | 20.08 | 501 / 504 |
thymus | 100% | 1000.82 | 653 / 653 | 99% | 21.60 | 600 / 605 |
kidney | 100% | 1179.69 | 89 / 89 | 99% | 19.46 | 892 / 901 |
adrenal gland | 100% | 1002.58 | 258 / 258 | 97% | 18.67 | 223 / 230 |
skin | 100% | 1323.44 | 1809 / 1809 | 96% | 19.90 | 455 / 472 |
pancreas | 97% | 486.02 | 319 / 328 | 99% | 16.52 | 176 / 178 |
liver | 100% | 715.13 | 226 / 226 | 94% | 11.22 | 380 / 406 |
adipose | 100% | 981.13 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.04 | 29 / 29 |
spleen | 100% | 1306.10 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 24.90 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.45 | 1 / 1 |
blood vessel | 100% | 806.64 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 98% | 521.15 | 789 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 598.05 | 839 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 956.21 | 837 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 9.80 | 68 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0006974 | Biological process | DNA damage response |
GO_0044818 | Biological process | mitotic G2/M transition checkpoint |
GO_0006281 | Biological process | DNA repair |
GO_0010212 | Biological process | response to ionizing radiation |
GO_0070876 | Cellular component | SOSS complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0035861 | Cellular component | site of double-strand break |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | INIP |
Protein name | SOSS complex subunit C (INTS3- and NABP-interacting protein) (Sensor of single-strand DNA complex subunit C) (Sensor of ssDNA subunit C) (SOSS-C) (Single-stranded DNA-binding protein-interacting protein 1) (SSB-interacting protein 1) (hSSBIP1) SOSS complex subunit C (SOSS-C) (SSB-interacting protein 1) (Sensor of single-strand DNA complex subunit C) (Sensor of ssDNA subunit C) (Single-stranded DNA-binding protein-interacting protein 1) INTS3 and NABP interacting protein |
Synonyms | HSPC291 HSPC043 C9orf80 SSBIP1 |
Description | FUNCTION: Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. Required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) and ATM-dependent signaling pathways. . FUNCTION: Component of the SOSS complex, a multiprotein complex that functions downstream of the MRN complex to promote DNA repair and G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints in the cellular DNA damage response including cell-cycle checkpoint activation, recombinational repair and maintenance of genomic stability. Required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs). . |
Accessions | Q5VWJ6 Q9NRY2 ENST00000374236.5 X6R8P6 ENST00000374242.9 [Q9NRY2-1] ENST00000374234.1 |