Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 38% ± 13% | |
epithelial cell | 5 studies | 23% ± 8% | |
retinal cone cell | 5 studies | 22% ± 6% | |
GABAergic neuron | 5 studies | 39% ± 11% | |
astrocyte | 5 studies | 30% ± 7% | |
interneuron | 5 studies | 33% ± 19% | |
endothelial cell | 4 studies | 25% ± 10% | |
glutamatergic neuron | 4 studies | 51% ± 11% | |
oligodendrocyte precursor cell | 4 studies | 29% ± 9% | |
retinal rod cell | 3 studies | 19% ± 2% | |
ependymal cell | 3 studies | 45% ± 15% | |
smooth muscle cell | 3 studies | 19% ± 3% | |
neuron | 3 studies | 28% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1887.97 | 245 / 245 | 98% | 7.40 | 494 / 502 |
lung | 99% | 1122.68 | 572 / 578 | 99% | 7.74 | 1142 / 1155 |
breast | 99% | 1151.31 | 455 / 459 | 99% | 10.22 | 1102 / 1118 |
brain | 98% | 828.19 | 2580 / 2642 | 100% | 13.39 | 702 / 705 |
thymus | 100% | 1986.50 | 653 / 653 | 97% | 10.85 | 587 / 605 |
skin | 99% | 1063.86 | 1792 / 1809 | 97% | 16.04 | 459 / 472 |
adrenal gland | 100% | 1176.08 | 257 / 258 | 96% | 7.83 | 221 / 230 |
esophagus | 99% | 1329.08 | 1432 / 1445 | 96% | 6.15 | 176 / 183 |
uterus | 100% | 2058.51 | 170 / 170 | 95% | 8.80 | 434 / 459 |
ovary | 100% | 2070.96 | 180 / 180 | 93% | 6.85 | 402 / 430 |
bladder | 100% | 1694.81 | 21 / 21 | 93% | 6.08 | 471 / 504 |
kidney | 100% | 1055.43 | 89 / 89 | 91% | 7.51 | 822 / 901 |
intestine | 99% | 1378.95 | 959 / 966 | 90% | 4.32 | 474 / 527 |
pancreas | 89% | 406.31 | 292 / 328 | 96% | 5.82 | 171 / 178 |
stomach | 95% | 920.54 | 341 / 359 | 89% | 4.43 | 254 / 286 |
liver | 68% | 252.99 | 154 / 226 | 66% | 3.13 | 268 / 406 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.48 | 1 / 1 |
blood vessel | 100% | 1856.34 | 1334 / 1335 | 0% | 0 | 0 / 0 |
spleen | 99% | 558.09 | 238 / 241 | 0% | 0 | 0 / 0 |
adipose | 97% | 772.30 | 1172 / 1204 | 0% | 0 | 0 / 0 |
muscle | 94% | 558.78 | 757 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 91% | 5.35 | 41 / 45 |
heart | 90% | 641.03 | 771 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 73% | 7.79 | 58 / 80 |
lymph node | 0% | 0 | 0 / 0 | 55% | 1.87 | 16 / 29 |
peripheral blood | 19% | 171.61 | 175 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008589 | Biological process | regulation of smoothened signaling pathway |
GO_0060271 | Biological process | cilium assembly |
GO_0007283 | Biological process | spermatogenesis |
GO_0120316 | Biological process | sperm flagellum assembly |
GO_0035735 | Biological process | intraciliary transport involved in cilium assembly |
GO_0035720 | Biological process | intraciliary anterograde transport |
GO_0042073 | Biological process | intraciliary transport |
GO_0005813 | Cellular component | centrosome |
GO_0031514 | Cellular component | motile cilium |
GO_0030992 | Cellular component | intraciliary transport particle B |
GO_0005814 | Cellular component | centriole |
GO_0097542 | Cellular component | ciliary tip |
GO_0097228 | Cellular component | sperm principal piece |
GO_0005929 | Cellular component | cilium |
GO_0005737 | Cellular component | cytoplasm |
GO_0097225 | Cellular component | sperm midpiece |
GO_0036064 | Cellular component | ciliary basal body |
GO_0015631 | Molecular function | tubulin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | IFT81 |
Protein name | IFT81 protein Intraflagellar transport protein 81 homolog (Carnitine deficiency-associated protein expressed in ventricle 1) (CDV-1) Intraflagellar transport 81 |
Synonyms | CDV1 |
Description | FUNCTION: Component of the intraflagellar transport (IFT) complex B: together with IFT74, forms a tubulin-binding module that specifically mediates transport of tubulin within the cilium. Binds tubulin via its CH (calponin-homology)-like region . Required for ciliogenesis . Required for proper regulation of SHH signaling . Plays an important role during spermatogenesis by modulating the assembly and elongation of the sperm flagella (By similarity). . |
Accessions | Q8WYA0 ENST00000552912.5 [Q8WYA0-1] H0YHE2 Q05DP9 F8W1J4 ENST00000361948.8 [Q8WYA0-3] ENST00000550156.5 ENST00000546374.5 ENST00000242591.10 [Q8WYA0-1] H0YIR4 ENST00000551273.1 |