Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 10 studies | 26% ± 9% | |
fibroblast | 4 studies | 21% ± 2% | |
GABAergic neuron | 4 studies | 34% ± 14% | |
glutamatergic neuron | 4 studies | 39% ± 15% | |
oligodendrocyte | 4 studies | 19% ± 2% | |
oligodendrocyte precursor cell | 4 studies | 20% ± 4% | |
endothelial cell | 3 studies | 26% ± 6% | |
epithelial cell | 3 studies | 26% ± 6% | |
interneuron | 3 studies | 31% ± 16% | |
neuron | 3 studies | 31% ± 8% | |
plasmacytoid dendritic cell | 3 studies | 17% ± 0% | |
astrocyte | 3 studies | 25% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 32% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1753.50 | 459 / 459 | 100% | 55.84 | 1118 / 1118 |
ovary | 100% | 2296.87 | 180 / 180 | 100% | 55.51 | 430 / 430 |
esophagus | 100% | 1011.41 | 1442 / 1445 | 100% | 29.15 | 183 / 183 |
uterus | 100% | 1900.42 | 170 / 170 | 100% | 48.84 | 458 / 459 |
brain | 100% | 910.63 | 2632 / 2642 | 100% | 53.99 | 705 / 705 |
prostate | 100% | 1238.92 | 245 / 245 | 100% | 35.18 | 500 / 502 |
lung | 100% | 1210.14 | 576 / 578 | 100% | 38.72 | 1154 / 1155 |
thymus | 100% | 1587.28 | 653 / 653 | 99% | 50.23 | 601 / 605 |
intestine | 100% | 1131.31 | 966 / 966 | 99% | 40.87 | 523 / 527 |
bladder | 100% | 1361.43 | 21 / 21 | 99% | 43.24 | 500 / 504 |
stomach | 99% | 798.03 | 357 / 359 | 100% | 39.00 | 285 / 286 |
skin | 100% | 1407.20 | 1809 / 1809 | 99% | 43.91 | 467 / 472 |
kidney | 100% | 1172.07 | 89 / 89 | 98% | 36.78 | 886 / 901 |
pancreas | 99% | 596.28 | 324 / 328 | 99% | 38.09 | 177 / 178 |
adrenal gland | 100% | 1093.76 | 258 / 258 | 97% | 32.92 | 223 / 230 |
liver | 62% | 210.73 | 140 / 226 | 72% | 14.76 | 291 / 406 |
adipose | 100% | 1705.58 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1771.19 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.02 | 29 / 29 |
spleen | 100% | 930.68 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 33.88 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.63 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 95% | 24.81 | 76 / 80 |
heart | 91% | 513.03 | 785 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 558.11 | 843 / 929 | 0% | 0 | 0 / 0 |
muscle | 47% | 153.97 | 380 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1905515 | Biological process | non-motile cilium assembly |
GO_0060271 | Biological process | cilium assembly |
GO_0007224 | Biological process | smoothened signaling pathway |
GO_0070613 | Biological process | regulation of protein processing |
GO_0001841 | Biological process | neural tube formation |
GO_0001947 | Biological process | heart looping |
GO_0042733 | Biological process | embryonic digit morphogenesis |
GO_0010839 | Biological process | negative regulation of keratinocyte proliferation |
GO_0009953 | Biological process | dorsal/ventral pattern formation |
GO_0035720 | Biological process | intraciliary anterograde transport |
GO_0042073 | Biological process | intraciliary transport |
GO_0043616 | Biological process | keratinocyte proliferation |
GO_0032391 | Cellular component | photoreceptor connecting cilium |
GO_0005813 | Cellular component | centrosome |
GO_0031514 | Cellular component | motile cilium |
GO_0030992 | Cellular component | intraciliary transport particle B |
GO_0044292 | Cellular component | dendrite terminus |
GO_0005814 | Cellular component | centriole |
GO_0097542 | Cellular component | ciliary tip |
GO_0005929 | Cellular component | cilium |
GO_0097546 | Cellular component | ciliary base |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005515 | Molecular function | protein binding |
Gene name | IFT52 |
Protein name | Intraflagellar transport protein 52 homolog (Protein NGD5 homolog) |
Synonyms | C20orf9 NGD5 CGI-53 |
Description | FUNCTION: Involved in ciliogenesis as part of a complex involved in intraflagellar transport (IFT), the bi-directional movement of particles required for the assembly, maintenance and functioning of primary cilia . Required for the anterograde transport of IFT88 . . |
Accessions | ENST00000373039.4 ENST00000373030.8 Q9Y366 |