Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 43% ± 15% | |
epithelial cell | 7 studies | 23% ± 7% | |
glutamatergic neuron | 7 studies | 41% ± 26% | |
astrocyte | 6 studies | 33% ± 12% | |
GABAergic neuron | 5 studies | 43% ± 20% | |
oligodendrocyte | 5 studies | 26% ± 6% | |
endothelial cell | 4 studies | 31% ± 10% | |
retinal cone cell | 4 studies | 21% ± 4% | |
oligodendrocyte precursor cell | 4 studies | 26% ± 9% | |
brush cell | 4 studies | 30% ± 17% | |
interneuron | 4 studies | 38% ± 19% | |
neuron | 3 studies | 25% ± 12% | |
retinal rod cell | 3 studies | 22% ± 2% | |
ependymal cell | 3 studies | 40% ± 12% | |
enterocyte | 3 studies | 16% ± 1% | |
goblet cell | 3 studies | 20% ± 2% | |
basal cell | 3 studies | 24% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 5233.18 | 180 / 180 | 100% | 10.16 | 430 / 430 |
breast | 100% | 2372.79 | 459 / 459 | 99% | 7.68 | 1108 / 1118 |
intestine | 100% | 2534.72 | 966 / 966 | 99% | 7.45 | 522 / 527 |
prostate | 100% | 3006.49 | 245 / 245 | 99% | 5.73 | 495 / 502 |
stomach | 100% | 1784.09 | 359 / 359 | 99% | 6.63 | 282 / 286 |
brain | 99% | 2617.18 | 2627 / 2642 | 99% | 8.54 | 697 / 705 |
pancreas | 99% | 1432.98 | 326 / 328 | 98% | 8.25 | 174 / 178 |
esophagus | 100% | 2144.15 | 1442 / 1445 | 97% | 5.91 | 178 / 183 |
lung | 99% | 2159.87 | 572 / 578 | 97% | 6.05 | 1121 / 1155 |
uterus | 100% | 3332.74 | 170 / 170 | 95% | 6.72 | 438 / 459 |
thymus | 100% | 4142.35 | 653 / 653 | 95% | 6.60 | 574 / 605 |
kidney | 100% | 2308.43 | 89 / 89 | 94% | 6.67 | 847 / 901 |
skin | 100% | 1784.88 | 1807 / 1809 | 94% | 6.81 | 443 / 472 |
bladder | 100% | 2287.10 | 21 / 21 | 92% | 5.27 | 466 / 504 |
adrenal gland | 100% | 1901.60 | 257 / 258 | 85% | 4.73 | 195 / 230 |
liver | 80% | 595.15 | 180 / 226 | 35% | 1.46 | 144 / 406 |
adipose | 100% | 1975.05 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 8.63 | 80 / 80 |
spleen | 100% | 2760.98 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1840.27 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 1786.67 | 834 / 861 | 0% | 0 | 0 / 0 |
muscle | 96% | 1094.26 | 773 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 91% | 4.96 | 41 / 45 |
lymph node | 0% | 0 | 0 / 0 | 69% | 2.20 | 20 / 29 |
peripheral blood | 26% | 278.94 | 240 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0061525 | Biological process | hindgut development |
GO_1905515 | Biological process | non-motile cilium assembly |
GO_0060271 | Biological process | cilium assembly |
GO_0007224 | Biological process | smoothened signaling pathway |
GO_0008544 | Biological process | epidermis development |
GO_0070986 | Biological process | left/right axis specification |
GO_0007219 | Biological process | Notch signaling pathway |
GO_0048596 | Biological process | embryonic camera-type eye morphogenesis |
GO_0031122 | Biological process | cytoplasmic microtubule organization |
GO_0001947 | Biological process | heart looping |
GO_0060173 | Biological process | limb development |
GO_0016485 | Biological process | protein processing |
GO_0045879 | Biological process | negative regulation of smoothened signaling pathway |
GO_0010839 | Biological process | negative regulation of keratinocyte proliferation |
GO_0009953 | Biological process | dorsal/ventral pattern formation |
GO_0045880 | Biological process | positive regulation of smoothened signaling pathway |
GO_0060021 | Biological process | roof of mouth development |
GO_0001843 | Biological process | neural tube closure |
GO_0007420 | Biological process | brain development |
GO_0060348 | Biological process | bone development |
GO_0035720 | Biological process | intraciliary anterograde transport |
GO_0042073 | Biological process | intraciliary transport |
GO_0021522 | Biological process | spinal cord motor neuron differentiation |
GO_0043616 | Biological process | keratinocyte proliferation |
GO_1903561 | Cellular component | extracellular vesicle |
GO_0030992 | Cellular component | intraciliary transport particle B |
GO_0005930 | Cellular component | axoneme |
GO_0097542 | Cellular component | ciliary tip |
GO_0097228 | Cellular component | sperm principal piece |
GO_0005929 | Cellular component | cilium |
GO_0097598 | Cellular component | sperm cytoplasmic droplet |
GO_0097225 | Cellular component | sperm midpiece |
GO_0036064 | Cellular component | ciliary basal body |
Gene name | IFT172 |
Protein name | Alternative protein IFT172 Intraflagellar transport 172 Intraflagellar transport protein 172 homolog |
Synonyms | KIAA1179 |
Description | FUNCTION: Required for the maintenance and formation of cilia. Plays an indirect role in hedgehog (Hh) signaling, cilia being required for all activity of the hedgehog pathway (By similarity). . |
Accessions | A0A6Q8PFU9 ENST00000450564.1 ENST00000675690.1 H7C252 Q9UG01 ENST00000674701.1 [Q9UG01-3] H7C186 ENST00000420854.1 A0A6Q8PFB6 A0A6Q8PFK2 ENST00000509128.5 A0A6Q8PGK4 H0YAI8 ENST00000260570.8 [Q9UG01-1] ENST00000676119.1 F5GZ56 ENST00000359466.10 [Q9UG01-3] ENST00000674932.1 ENST00000416524.2 L8E9V2 H7C161 A0A6Q8PHF0 ENST00000675729.1 A0A6Q8PGJ2 ENST00000675728.1 A0A6Q8PG03 ENST00000443889.1 ENST00000675963.1 ENST00000674824.1 ENST00000675410.1 |