Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| ciliated cell | 11 studies | 33% ± 9% | |
| endothelial cell | 6 studies | 26% ± 10% | |
| glutamatergic neuron | 4 studies | 29% ± 13% | |
| GABAergic neuron | 3 studies | 28% ± 10% | |
| type I pneumocyte | 3 studies | 18% ± 3% | |
| astrocyte | 3 studies | 24% ± 3% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 22% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| thymus | 100% | 7360.06 | 653 / 653 | 99% | 24.98 | 599 / 605 |
| prostate | 100% | 2934.57 | 245 / 245 | 99% | 15.84 | 495 / 502 |
| brain | 99% | 1885.85 | 2606 / 2642 | 99% | 22.13 | 701 / 705 |
| breast | 100% | 2216.12 | 459 / 459 | 98% | 24.55 | 1092 / 1118 |
| ovary | 100% | 3713.88 | 180 / 180 | 98% | 15.78 | 420 / 430 |
| adrenal gland | 100% | 2232.75 | 258 / 258 | 97% | 11.44 | 224 / 230 |
| pancreas | 99% | 1188.50 | 326 / 328 | 97% | 13.00 | 173 / 178 |
| skin | 100% | 1558.90 | 1807 / 1809 | 96% | 10.68 | 455 / 472 |
| kidney | 100% | 2327.69 | 89 / 89 | 94% | 18.20 | 847 / 901 |
| intestine | 100% | 1753.28 | 966 / 966 | 92% | 10.05 | 484 / 527 |
| bladder | 100% | 2837.05 | 21 / 21 | 92% | 12.91 | 462 / 504 |
| lung | 100% | 2649.15 | 577 / 578 | 91% | 11.07 | 1053 / 1155 |
| esophagus | 100% | 1615.01 | 1443 / 1445 | 90% | 8.73 | 165 / 183 |
| stomach | 99% | 1468.92 | 355 / 359 | 89% | 8.50 | 255 / 286 |
| uterus | 100% | 3268.24 | 170 / 170 | 88% | 10.52 | 403 / 459 |
| spleen | 100% | 1102.31 | 241 / 241 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 100% | 9.85 | 1 / 1 |
| adipose | 100% | 1500.94 | 1203 / 1204 | 0% | 0 | 0 / 0 |
| liver | 77% | 459.90 | 174 / 226 | 23% | 2.66 | 93 / 406 |
| blood vessel | 100% | 1466.52 | 1332 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 99% | 10.03 | 79 / 80 |
| heart | 90% | 815.77 | 775 / 861 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 78% | 6.58 | 35 / 45 |
| muscle | 60% | 363.30 | 478 / 803 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 28% | 1.39 | 8 / 29 |
| peripheral blood | 19% | 137.91 | 175 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0008589 | Biological process | regulation of smoothened signaling pathway |
| GO_1905515 | Biological process | non-motile cilium assembly |
| GO_0060271 | Biological process | cilium assembly |
| GO_0061512 | Biological process | protein localization to cilium |
| GO_0035845 | Biological process | photoreceptor cell outer segment organization |
| GO_0007507 | Biological process | heart development |
| GO_0007368 | Biological process | determination of left/right symmetry |
| GO_0021532 | Biological process | neural tube patterning |
| GO_0042733 | Biological process | embryonic digit morphogenesis |
| GO_0035721 | Biological process | intraciliary retrograde transport |
| GO_1902017 | Biological process | regulation of cilium assembly |
| GO_0031076 | Biological process | embryonic camera-type eye development |
| GO_0048701 | Biological process | embryonic cranial skeleton morphogenesis |
| GO_1990403 | Biological process | embryonic brain development |
| GO_0032391 | Cellular component | photoreceptor connecting cilium |
| GO_0120199 | Cellular component | cone photoreceptor outer segment |
| GO_0005813 | Cellular component | centrosome |
| GO_0005814 | Cellular component | centriole |
| GO_0005930 | Cellular component | axoneme |
| GO_0097542 | Cellular component | ciliary tip |
| GO_0030991 | Cellular component | intraciliary transport particle A |
| GO_0005929 | Cellular component | cilium |
| GO_0036064 | Cellular component | ciliary basal body |
| GO_0005515 | Molecular function | protein binding |
| GO_0003674 | Molecular function | molecular_function |
| Gene name | IFT140 |
| Protein name | Intraflagellar transport protein 140 homolog (WD and tetratricopeptide repeats protein 2) Intraflagellar transport 140 |
| Synonyms | WDTC2 KIAA0590 |
| Description | FUNCTION: Component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs) . Plays a pivotal role in proper development and function of ciliated cells through its role in ciliogenesis and/or cilium maintenance . Required for the development and maintenance of the outer segments of rod and cone photoreceptor cells. Plays a role in maintenance and the delivery of opsin to the outer segment of photoreceptor cells (By similarity). . |
| Accessions | I3L0Y8 ENST00000361339.9 [Q96RY7-2] ENST00000426508.7 [Q96RY7-1] Q96RY7 J3KPW0 ENST00000397417.6 ENST00000569646.5 ENST00000569812.1 ENST00000568837.1 H3BTA5 H3BNC5 |
