Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 23% ± 7% | |
fibroblast | 6 studies | 19% ± 3% | |
epithelial cell | 6 studies | 30% ± 13% | |
oligodendrocyte | 6 studies | 21% ± 6% | |
GABAergic neuron | 5 studies | 26% ± 9% | |
astrocyte | 5 studies | 22% ± 6% | |
glutamatergic neuron | 4 studies | 34% ± 12% | |
natural killer cell | 4 studies | 18% ± 3% | |
interneuron | 4 studies | 28% ± 16% | |
B cell | 3 studies | 18% ± 2% | |
CD4-positive, alpha-beta T cell | 3 studies | 21% ± 3% | |
classical monocyte | 3 studies | 25% ± 7% | |
non-classical monocyte | 3 studies | 31% ± 14% | |
retinal bipolar neuron | 3 studies | 21% ± 4% | |
myofibroblast cell | 3 studies | 16% ± 1% | |
pericyte | 3 studies | 17% ± 0% | |
ciliated cell | 3 studies | 24% ± 2% | |
dendritic cell | 3 studies | 34% ± 12% | |
basal cell | 3 studies | 28% ± 4% | |
goblet cell | 3 studies | 25% ± 11% | |
transit amplifying cell | 3 studies | 29% ± 10% | |
neuron | 3 studies | 24% ± 5% | |
connective tissue cell | 3 studies | 19% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1375.17 | 1445 / 1445 | 100% | 23.29 | 183 / 183 |
intestine | 100% | 1370.60 | 966 / 966 | 100% | 15.71 | 527 / 527 |
lung | 100% | 1319.36 | 578 / 578 | 100% | 21.01 | 1155 / 1155 |
ovary | 100% | 1869.02 | 180 / 180 | 100% | 16.01 | 430 / 430 |
stomach | 100% | 983.56 | 359 / 359 | 100% | 17.24 | 285 / 286 |
breast | 100% | 1724.09 | 459 / 459 | 100% | 24.17 | 1114 / 1118 |
bladder | 100% | 1481.10 | 21 / 21 | 100% | 16.46 | 502 / 504 |
prostate | 100% | 1413.86 | 245 / 245 | 100% | 19.43 | 500 / 502 |
brain | 100% | 934.29 | 2634 / 2642 | 100% | 17.21 | 704 / 705 |
uterus | 100% | 1781.64 | 170 / 170 | 99% | 19.43 | 453 / 459 |
thymus | 100% | 1218.17 | 653 / 653 | 98% | 13.29 | 594 / 605 |
pancreas | 99% | 692.60 | 324 / 328 | 98% | 13.37 | 175 / 178 |
skin | 100% | 2020.75 | 1809 / 1809 | 96% | 19.03 | 454 / 472 |
kidney | 100% | 822.62 | 89 / 89 | 95% | 10.12 | 852 / 901 |
adrenal gland | 100% | 1436.14 | 258 / 258 | 92% | 7.83 | 211 / 230 |
liver | 100% | 635.47 | 226 / 226 | 84% | 7.04 | 343 / 406 |
adipose | 100% | 1540.83 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1247.37 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1137.53 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 21.78 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.11 | 1 / 1 |
muscle | 100% | 1013.97 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 716.30 | 838 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 11.33 | 27 / 29 |
peripheral blood | 71% | 797.60 | 664 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 71% | 5.14 | 57 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030178 | Biological process | negative regulation of Wnt signaling pathway |
GO_0016055 | Biological process | Wnt signaling pathway |
GO_0008333 | Biological process | endosome to lysosome transport |
GO_0016589 | Cellular component | NURF complex |
GO_0003677 | Molecular function | DNA binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | HMGXB4 |
Protein name | HMGXB4 protein HMG domain-containing protein 4 (HMG box-containing protein 4) (High mobility group protein 2-like 1) (Protein HMGBCG) HMGXB4 protein (High-mobility group protein 2-like 1, isoform CRA_a) HMG-box containing 4 |
Synonyms | hCG_41533 HMGBCG HMG2L1 |
Description | FUNCTION: Negatively regulates Wnt/beta-catenin signaling during development. . |
Accessions | F8WDU7 Q6PJ09 ENST00000420166.5 Q2T9L2 ENST00000418170.5 ENST00000216106.6 B0QXZ8 Q9UGU5 Q7Z641 ENST00000455359.5 B0QXZ9 Q6PJC1 Q2M3X1 Q6P681 |