Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 8 studies | 26% ± 7% | |
| glutamatergic neuron | 7 studies | 40% ± 24% | |
| GABAergic neuron | 6 studies | 36% ± 20% | |
| astrocyte | 6 studies | 29% ± 10% | |
| oligodendrocyte | 6 studies | 26% ± 6% | |
| oligodendrocyte precursor cell | 6 studies | 31% ± 12% | |
| microglial cell | 5 studies | 22% ± 4% | |
| macrophage | 5 studies | 21% ± 4% | |
| neuron | 4 studies | 26% ± 10% | |
| cardiac muscle cell | 4 studies | 24% ± 3% | |
| fibroblast | 4 studies | 17% ± 3% | |
| interneuron | 4 studies | 39% ± 20% | |
| epithelial cell | 3 studies | 27% ± 4% | |
| type I pneumocyte | 3 studies | 20% ± 4% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 8 studies | 34% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 1070.01 | 1445 / 1445 | 100% | 10.80 | 183 / 183 |
| lung | 100% | 1348.10 | 578 / 578 | 98% | 11.13 | 1137 / 1155 |
| skin | 100% | 1462.75 | 1808 / 1809 | 98% | 27.86 | 463 / 472 |
| brain | 99% | 1150.44 | 2619 / 2642 | 99% | 20.02 | 695 / 705 |
| stomach | 100% | 915.79 | 359 / 359 | 97% | 10.75 | 278 / 286 |
| intestine | 100% | 1214.37 | 966 / 966 | 97% | 11.00 | 511 / 527 |
| breast | 100% | 1326.99 | 459 / 459 | 96% | 13.68 | 1072 / 1118 |
| pancreas | 100% | 702.53 | 327 / 328 | 95% | 9.77 | 169 / 178 |
| ovary | 100% | 1735.51 | 180 / 180 | 94% | 10.12 | 405 / 430 |
| thymus | 100% | 1545.02 | 653 / 653 | 94% | 11.59 | 566 / 605 |
| kidney | 100% | 1022.53 | 89 / 89 | 93% | 11.68 | 838 / 901 |
| bladder | 100% | 1236.62 | 21 / 21 | 91% | 8.44 | 459 / 504 |
| uterus | 100% | 1591.51 | 170 / 170 | 89% | 8.94 | 408 / 459 |
| adrenal gland | 100% | 1463.76 | 258 / 258 | 86% | 11.02 | 198 / 230 |
| prostate | 100% | 1209.11 | 245 / 245 | 86% | 6.89 | 431 / 502 |
| liver | 100% | 765.70 | 226 / 226 | 76% | 6.42 | 309 / 406 |
| adipose | 100% | 1258.39 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 1233.14 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 100% | 1492.55 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 2127.32 | 241 / 241 | 0% | 0 | 0 / 0 |
| heart | 98% | 1151.64 | 847 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 95% | 17.21 | 76 / 80 |
| tonsil | 0% | 0 | 0 / 0 | 89% | 9.00 | 40 / 45 |
| lymph node | 0% | 0 | 0 / 0 | 83% | 10.70 | 24 / 29 |
| peripheral blood | 74% | 1032.95 | 688 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0006325 | Biological process | chromatin organization |
| GO_0010468 | Biological process | regulation of gene expression |
| GO_0033234 | Biological process | negative regulation of protein sumoylation |
| GO_0045665 | Biological process | negative regulation of neuron differentiation |
| GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
| GO_0006355 | Biological process | regulation of DNA-templated transcription |
| GO_0005634 | Cellular component | nucleus |
| GO_0003677 | Molecular function | DNA binding |
| GO_0042802 | Molecular function | identical protein binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | HMG20A |
| Protein name | High mobility group protein 20A (HMG box-containing protein 20A) High mobility group 20A High mobility group protein 20A (HMG box-containing protein 20A) (HMG domain-containing protein 1) (HMG domain-containing protein HMGX1) |
| Synonyms | HMGXB1 HMGX1 |
| Description | FUNCTION: Plays a role in neuronal differentiation as chromatin-associated protein. Acts as inhibitor of HMG20B. Overcomes the repressive effects of the neuronal silencer REST and induces the activation of neuronal-specific genes. Involved in the recruitment of the histone methyltransferase KMT2A/MLL1 and consequent increased methylation of histone H3 lysine 4 (By similarity). . |
| Accessions | ENST00000559099.5 ENST00000381714.7 [Q9NP66-1] ENST00000560498.5 ENST00000558845.1 ENST00000558651.5 H0YNS8 ENST00000336216.9 [Q9NP66-1] ENST00000558176.1 H0YKL0 H0YMG2 ENST00000560867.1 ENST00000559035.5 H0YMS9 H0YKM5 H0YK55 Q9NP66 H0YM80 |