Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 3 studies | 19% ± 3% | |
GABAergic neuron | 3 studies | 29% ± 4% | |
glutamatergic neuron | 3 studies | 32% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 23% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 1661.48 | 180 / 180 | 100% | 7.63 | 430 / 430 |
prostate | 100% | 921.97 | 245 / 245 | 100% | 10.07 | 502 / 502 |
thymus | 100% | 1189.37 | 653 / 653 | 100% | 14.82 | 605 / 605 |
uterus | 100% | 1117.56 | 170 / 170 | 100% | 9.84 | 459 / 459 |
breast | 100% | 1050.18 | 459 / 459 | 100% | 10.60 | 1117 / 1118 |
kidney | 100% | 836.35 | 89 / 89 | 100% | 10.39 | 897 / 901 |
esophagus | 100% | 766.56 | 1445 / 1445 | 99% | 7.73 | 182 / 183 |
pancreas | 99% | 464.65 | 326 / 328 | 100% | 8.96 | 178 / 178 |
lung | 99% | 739.73 | 574 / 578 | 100% | 9.10 | 1155 / 1155 |
stomach | 100% | 663.00 | 359 / 359 | 99% | 6.77 | 284 / 286 |
bladder | 100% | 979.86 | 21 / 21 | 99% | 7.70 | 499 / 504 |
adrenal gland | 100% | 1992.55 | 258 / 258 | 99% | 11.33 | 227 / 230 |
intestine | 100% | 866.55 | 966 / 966 | 98% | 6.96 | 519 / 527 |
liver | 100% | 512.70 | 226 / 226 | 98% | 5.47 | 398 / 406 |
brain | 98% | 453.35 | 2587 / 2642 | 100% | 10.11 | 705 / 705 |
skin | 100% | 820.51 | 1809 / 1809 | 97% | 10.25 | 459 / 472 |
adipose | 100% | 1029.89 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 933.52 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 13.21 | 29 / 29 |
spleen | 100% | 1312.10 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 9.91 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.56 | 1 / 1 |
muscle | 100% | 842.10 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 636.54 | 842 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 7.46 | 76 / 80 |
peripheral blood | 83% | 433.65 | 770 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032508 | Biological process | DNA duplex unwinding |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0010792 | Biological process | DNA double-strand break processing involved in repair via single-strand annealing |
GO_0097681 | Biological process | double-strand break repair via alternative nonhomologous end joining |
GO_0045003 | Biological process | double-strand break repair via synthesis-dependent strand annealing |
GO_1905168 | Biological process | positive regulation of double-strand break repair via homologous recombination |
GO_0090734 | Cellular component | site of DNA damage |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_1990518 | Molecular function | single-stranded 3'-5' DNA helicase activity |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
GO_0005524 | Molecular function | ATP binding |
Gene name | HELQ |
Protein name | Helicase, POLQ like Helicase POLQ-like isoform 1 Helicase POLQ-like (EC 3.6.4.12) (Mus308-like helicase) (POLQ-like helicase) Helicase POLQ-like isoform 2 |
Synonyms | HEL308 |
Description | FUNCTION: Single-stranded 3'-5' DNA helicase that plays a key role in homology-driven double-strand break (DSB) repair . Involved in different DSB repair mechanisms that are guided by annealing of extensive stretches of complementary bases at break ends, such as microhomology-mediated end-joining (MMEJ), single-strand annealing (SSA) or synthesis-dependent strand annealing (SDSA) . Possesses both DNA unwinding and annealing activities . Forms a complex with RAD51, stimulating HELQ DNA helicase activity and ability to unwing DNA . Efficiently unwinds substrates containing 3' overhangs or a D-loop . In contrast, interaction with the replication protein A (RPA/RP-A) complex inhibits DNA unwinding by HELQ but strongly stimulates DNA strand annealing . Triggers displacement of RPA from single-stranded DNA to facilitate annealing of complementary sequences . . |
Accessions | A0A0S2Z5X5 ENST00000295488.8 [Q8TDG4-1] Q8TDG4 ENST00000510985.1 E3W982 ENST00000508591.5 A0A0S2Z5V3 E3W980 |