Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 28% ± 9% | |
microglial cell | 10 studies | 34% ± 13% | |
adipocyte | 9 studies | 26% ± 8% | |
glutamatergic neuron | 7 studies | 45% ± 26% | |
oligodendrocyte precursor cell | 7 studies | 28% ± 12% | |
GABAergic neuron | 7 studies | 40% ± 20% | |
oligodendrocyte | 7 studies | 30% ± 9% | |
macrophage | 7 studies | 31% ± 13% | |
interneuron | 6 studies | 37% ± 21% | |
astrocyte | 6 studies | 33% ± 12% | |
fibroblast | 6 studies | 22% ± 4% | |
cardiac muscle cell | 5 studies | 25% ± 4% | |
endothelial cell of lymphatic vessel | 5 studies | 27% ± 4% | |
neuron | 4 studies | 39% ± 13% | |
epithelial cell | 4 studies | 27% ± 13% | |
dendritic cell | 4 studies | 25% ± 4% | |
ciliated cell | 4 studies | 20% ± 4% | |
myeloid cell | 4 studies | 25% ± 1% | |
pericyte | 4 studies | 18% ± 1% | |
retinal rod cell | 3 studies | 21% ± 2% | |
abnormal cell | 3 studies | 24% ± 8% | |
B cell | 3 studies | 23% ± 6% | |
T cell | 3 studies | 22% ± 1% | |
alveolar macrophage | 3 studies | 45% ± 9% | |
monocyte | 3 studies | 38% ± 19% | |
type I pneumocyte | 3 studies | 22% ± 4% | |
lymphocyte | 3 studies | 28% ± 5% | |
smooth muscle cell | 3 studies | 18% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2400.64 | 1444 / 1445 | 100% | 19.18 | 183 / 183 |
breast | 100% | 3349.03 | 459 / 459 | 100% | 24.54 | 1116 / 1118 |
prostate | 100% | 2714.25 | 245 / 245 | 100% | 22.84 | 501 / 502 |
lung | 100% | 2959.97 | 578 / 578 | 100% | 15.37 | 1152 / 1155 |
pancreas | 100% | 2961.66 | 328 / 328 | 99% | 13.73 | 177 / 178 |
stomach | 100% | 2352.42 | 359 / 359 | 99% | 13.99 | 283 / 286 |
intestine | 100% | 2695.33 | 966 / 966 | 99% | 12.54 | 521 / 527 |
brain | 99% | 2152.12 | 2611 / 2642 | 100% | 18.50 | 705 / 705 |
bladder | 100% | 2214.19 | 21 / 21 | 99% | 13.23 | 497 / 504 |
thymus | 100% | 3240.75 | 653 / 653 | 99% | 16.20 | 596 / 605 |
ovary | 100% | 2453.32 | 180 / 180 | 98% | 10.09 | 423 / 430 |
skin | 100% | 3426.83 | 1809 / 1809 | 98% | 16.42 | 461 / 472 |
uterus | 100% | 2588.78 | 170 / 170 | 97% | 12.76 | 446 / 459 |
kidney | 100% | 1798.51 | 89 / 89 | 96% | 14.92 | 866 / 901 |
adrenal gland | 100% | 2795.64 | 258 / 258 | 94% | 11.23 | 216 / 230 |
liver | 100% | 1582.27 | 226 / 226 | 84% | 6.43 | 341 / 406 |
adipose | 100% | 3144.84 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 3466.15 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.08 | 1 / 1 |
blood vessel | 100% | 2434.57 | 1334 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 11.87 | 44 / 45 |
heart | 97% | 1697.48 | 839 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 14.54 | 28 / 29 |
muscle | 95% | 940.07 | 765 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 10.83 | 75 / 80 |
peripheral blood | 84% | 1381.22 | 783 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0015031 | Biological process | protein transport |
GO_0008104 | Biological process | protein localization |
GO_0006897 | Biological process | endocytosis |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0016607 | Cellular component | nuclear speck |
GO_0005829 | Cellular component | cytosol |
GO_0030136 | Cellular component | clathrin-coated vesicle |
GO_0030139 | Cellular component | endocytic vesicle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | HEATR5B |
Protein name | HEAT repeat-containing protein 5B HEAT repeat containing 5B |
Synonyms | KIAA1414 p200a p200 |
Description | FUNCTION: Component of clathrin-coated vesicles . Component of the aftiphilin/p200/gamma-synergin complex, which plays roles in AP1G1/AP-1-mediated protein trafficking including the trafficking of transferrin from early to recycling endosomes, and the membrane trafficking of furin and the lysosomal enzyme cathepsin D between the trans-Golgi network (TGN) and endosomes . . |
Accessions | ENST00000233099.6 [Q9P2D3-1] H7C2X3 Q9P2D3 ENST00000425467.5 B9EK47 |