Name | Number of supported studies | Average coverage | |
---|---|---|---|
natural killer cell | 14 studies | 22% ± 7% | |
CD16-positive, CD56-dim natural killer cell, human | 11 studies | 23% ± 7% | |
endothelial cell | 7 studies | 26% ± 9% | |
glutamatergic neuron | 6 studies | 38% ± 21% | |
mucosal invariant T cell | 6 studies | 32% ± 10% | |
epithelial cell | 6 studies | 32% ± 13% | |
retinal cone cell | 6 studies | 20% ± 4% | |
ciliated cell | 5 studies | 26% ± 8% | |
CD8-positive, alpha-beta T cell | 5 studies | 21% ± 4% | |
interneuron | 5 studies | 30% ± 20% | |
oligodendrocyte precursor cell | 5 studies | 23% ± 9% | |
mature NK T cell | 4 studies | 19% ± 2% | |
neuron | 4 studies | 23% ± 7% | |
GABAergic neuron | 4 studies | 41% ± 16% | |
astrocyte | 4 studies | 30% ± 7% | |
oligodendrocyte | 4 studies | 22% ± 4% | |
gamma-delta T cell | 4 studies | 23% ± 4% | |
basal cell | 3 studies | 30% ± 17% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 16% ± 1% | |
CD8-positive, alpha-beta memory T cell | 3 studies | 19% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 32% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 8497.72 | 1445 / 1445 | 100% | 43.20 | 183 / 183 |
prostate | 100% | 10054.47 | 245 / 245 | 100% | 102.36 | 502 / 502 |
thymus | 100% | 9977.49 | 653 / 653 | 100% | 51.90 | 605 / 605 |
breast | 100% | 4457.05 | 459 / 459 | 100% | 52.14 | 1117 / 1118 |
skin | 100% | 10385.89 | 1809 / 1809 | 100% | 52.20 | 470 / 472 |
uterus | 100% | 7243.93 | 170 / 170 | 99% | 36.69 | 456 / 459 |
intestine | 100% | 5021.13 | 966 / 966 | 99% | 27.33 | 522 / 527 |
brain | 99% | 5260.22 | 2622 / 2642 | 100% | 45.85 | 703 / 705 |
pancreas | 100% | 4366.36 | 328 / 328 | 99% | 30.01 | 176 / 178 |
bladder | 100% | 5078.62 | 21 / 21 | 99% | 30.08 | 497 / 504 |
stomach | 100% | 4587.90 | 359 / 359 | 99% | 28.54 | 282 / 286 |
kidney | 100% | 4746.89 | 89 / 89 | 99% | 25.93 | 888 / 901 |
lung | 100% | 5340.43 | 576 / 578 | 99% | 34.92 | 1141 / 1155 |
adrenal gland | 100% | 6436.75 | 258 / 258 | 98% | 34.63 | 226 / 230 |
ovary | 100% | 5997.51 | 180 / 180 | 94% | 22.72 | 405 / 430 |
liver | 100% | 2491.42 | 225 / 226 | 85% | 14.23 | 344 / 406 |
eye | 0% | 0 | 0 / 0 | 100% | 43.24 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 27.99 | 29 / 29 |
muscle | 100% | 7247.84 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5020.28 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 37.31 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 17.97 | 1 / 1 |
adipose | 100% | 4350.52 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4640.18 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 5132.15 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 85% | 2967.63 | 788 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006384 | Biological process | transcription initiation at RNA polymerase III promoter |
GO_0042797 | Biological process | tRNA transcription by RNA polymerase III |
GO_0009304 | Biological process | tRNA transcription |
GO_0009303 | Biological process | rRNA transcription |
GO_0042791 | Biological process | 5S class rRNA transcription by RNA polymerase III |
GO_0006383 | Biological process | transcription by RNA polymerase III |
GO_0000127 | Cellular component | transcription factor TFIIIC complex |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0016020 | Cellular component | membrane |
GO_0003677 | Molecular function | DNA binding |
GO_0000995 | Molecular function | RNA polymerase III general transcription initiation factor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | GTF3C1 |
Protein name | GTF3C1 protein General transcription factor IIIC subunit 1 General transcription factor 3C polypeptide 1 (TF3C-alpha) (TFIIIC box B-binding subunit) (Transcription factor IIIC 220 kDa subunit) (TFIIIC 220 kDa subunit) (TFIIIC220) (Transcription factor IIIC subunit alpha) |
Synonyms | |
Description | FUNCTION: Required for RNA polymerase III-mediated transcription. Component of TFIIIC that initiates transcription complex assembly on tRNA and is required for transcription of 5S rRNA and other stable nuclear and cytoplasmic RNAs. Binds to the box B promoter element. |
Accessions | ENST00000571886.1 H3BU55 ENST00000561623.5 [Q12789-3] ENST00000569653.1 I3L1Z3 Q7Z7H4 ENST00000564664.5 Q12789 H3BU37 H3BRD0 ENST00000568569.1 ENST00000356183.9 [Q12789-2] |