Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 23 studies | 71% ± 16% | |
fibroblast | 18 studies | 26% ± 11% | |
oligodendrocyte | 16 studies | 81% ± 12% | |
oligodendrocyte precursor cell | 16 studies | 63% ± 15% | |
plasmacytoid dendritic cell | 14 studies | 24% ± 7% | |
glutamatergic neuron | 13 studies | 60% ± 24% | |
pericyte | 10 studies | 37% ± 20% | |
GABAergic neuron | 9 studies | 53% ± 20% | |
smooth muscle cell | 8 studies | 32% ± 15% | |
glial cell | 8 studies | 67% ± 20% | |
microglial cell | 8 studies | 36% ± 22% | |
neuron | 7 studies | 43% ± 14% | |
interneuron | 7 studies | 42% ± 19% | |
retinal rod cell | 7 studies | 49% ± 16% | |
connective tissue cell | 6 studies | 33% ± 8% | |
retinal cone cell | 6 studies | 41% ± 10% | |
Mueller cell | 6 studies | 85% ± 11% | |
endothelial cell | 5 studies | 46% ± 16% | |
myofibroblast cell | 4 studies | 22% ± 4% | |
Schwann cell | 4 studies | 77% ± 13% | |
retinal bipolar neuron | 4 studies | 28% ± 9% | |
ciliated cell | 4 studies | 28% ± 9% | |
melanocyte | 4 studies | 48% ± 25% | |
macrophage | 3 studies | 43% ± 8% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 68% ± 9% | |
neural crest cell | 3 studies | 48% ± 16% | |
GABAergic interneuron | 3 studies | 37% ± 5% | |
epithelial cell | 3 studies | 29% ± 15% | |
ON-bipolar cell | 3 studies | 22% ± 6% | |
rod bipolar cell | 3 studies | 27% ± 10% | |
basal cell | 3 studies | 22% ± 5% | |
neural progenitor cell | 3 studies | 63% ± 11% | |
ependymal cell | 3 studies | 66% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 44046.60 | 2639 / 2642 | 100% | 917.34 | 703 / 705 |
skin | 9% | 533.14 | 157 / 1809 | 96% | 144.22 | 453 / 472 |
eye | 0% | 0 | 0 / 0 | 98% | 118.93 | 78 / 80 |
prostate | 49% | 2827.81 | 119 / 245 | 32% | 5.80 | 162 / 502 |
ovary | 2% | 85.39 | 3 / 180 | 51% | 13.06 | 221 / 430 |
esophagus | 36% | 2306.75 | 526 / 1445 | 10% | 1.93 | 18 / 183 |
lung | 36% | 1723.28 | 206 / 578 | 10% | 2.01 | 110 / 1155 |
breast | 18% | 970.08 | 83 / 459 | 23% | 6.35 | 256 / 1118 |
intestine | 35% | 2695.03 | 340 / 966 | 1% | 0.20 | 6 / 527 |
uterus | 9% | 440.06 | 15 / 170 | 16% | 5.29 | 75 / 459 |
stomach | 18% | 1091.55 | 65 / 359 | 4% | 0.75 | 11 / 286 |
tonsil | 0% | 0 | 0 / 0 | 20% | 4.23 | 9 / 45 |
spleen | 20% | 958.97 | 47 / 241 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 13% | 3.77 | 29 / 230 |
bladder | 10% | 394.86 | 2 / 21 | 3% | 0.86 | 15 / 504 |
blood vessel | 10% | 534.62 | 128 / 1335 | 0% | 0 | 0 / 0 |
kidney | 2% | 108.92 | 2 / 89 | 4% | 1.10 | 36 / 901 |
heart | 5% | 255.92 | 47 / 861 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0 | 0 / 328 | 4% | 1.15 | 7 / 178 |
adipose | 2% | 103.24 | 26 / 1204 | 0% | 0 | 0 / 0 |
thymus | 0% | 13.48 | 2 / 653 | 1% | 0.24 | 9 / 605 |
liver | 0% | 0 | 0 / 226 | 1% | 0.17 | 3 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015031 | Biological process | protein transport |
GO_0001503 | Biological process | ossification |
GO_0051612 | Biological process | negative regulation of serotonin uptake |
GO_0061564 | Biological process | axon development |
GO_0051893 | Biological process | regulation of focal adhesion assembly |
GO_0022010 | Biological process | central nervous system myelination |
GO_0030501 | Biological process | positive regulation of bone mineralization |
GO_0007399 | Biological process | nervous system development |
GO_0032956 | Biological process | regulation of actin cytoskeleton organization |
GO_0085029 | Biological process | extracellular matrix assembly |
GO_2000009 | Biological process | negative regulation of protein localization to cell surface |
GO_0045121 | Cellular component | membrane raft |
GO_0043209 | Cellular component | myelin sheath |
GO_0005886 | Cellular component | plasma membrane |
GO_0019911 | Molecular function | structural constituent of myelin sheath |
GO_0003674 | Molecular function | molecular_function |
Gene name | GPM6B |
Protein name | Glycoprotein M6B (cDNA FLJ54144, highly similar to Neuronal membrane glycoprotein M6-b) Glycoprotein M6B (cDNA FLJ59871, highly similar to Neuronal membrane glycoprotein M6-b) Glycoprotein M6B Neuronal membrane glycoprotein M6-b (M6b) |
Synonyms | M6B |
Description | FUNCTION: May be involved in neural development. Involved in regulation of osteoblast function and bone formation. Involved in matrix vesicle release by osteoblasts; this function seems to involve maintenance of the actin cytoskeleton. May be involved in cellular trafficking of SERT and thereby in regulation of serotonin uptake. . |
Accessions | ENST00000475307.1 ENST00000493677.5 ENST00000398361.7 C9JZE8 ENST00000356942.9 [Q13491-1] C9J8H8 ENST00000468080.1 ENST00000316715.9 [Q13491-4] ENST00000493085.5 C9J028 B7Z248 B7Z613 ENST00000454189.7 [Q13491-2] Q13491 ENST00000355135.6 [Q13491-3] |