GPATCH4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	6 studies	27% ± 12%	Explore
basal cell	4 studies	22% ± 5%	Explore
CD4-positive, alpha-beta T cell	3 studies	27% ± 16%	Explore
endothelial cell	3 studies	20% ± 2%	Explore
dendritic cell	3 studies	23% ± 3%	Explore
intestinal crypt stem cell	3 studies	17% ± 1%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
liver	3 studies	25% ± 7%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
intestine	100%	1844.99	966 / 966	100%	34.96	527 / 527
esophagus	100%	1966.02	1442 / 1445	100%	36.84	183 / 183
stomach	100%	1574.47	358 / 359	100%	34.93	286 / 286
uterus	100%	1858.75	170 / 170	99%	32.28	456 / 459
breast	100%	1958.19	459 / 459	99%	38.57	1110 / 1118
ovary	100%	1471.10	180 / 180	99%	21.09	426 / 430
bladder	100%	2420.33	21 / 21	99%	29.72	499 / 504
brain	99%	1514.79	2619 / 2642	100%	32.75	704 / 705
prostate	100%	2070.44	245 / 245	99%	29.46	496 / 502
skin	100%	2379.98	1809 / 1809	99%	50.74	466 / 472
pancreas	99%	1118.54	325 / 328	99%	26.19	177 / 178
lung	98%	1586.95	569 / 578	99%	30.51	1149 / 1155
liver	98%	1159.48	221 / 226	99%	25.55	401 / 406
thymus	100%	1599.24	653 / 653	96%	19.64	583 / 605
kidney	100%	1462.93	89 / 89	92%	14.51	829 / 901
adrenal gland	100%	1869.21	258 / 258	87%	17.72	200 / 230
adipose	100%	2141.27	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	50.63	29 / 29
muscle	100%	4268.16	803 / 803	0%	0	0 / 0
spleen	100%	1874.36	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	26.42	45 / 45
ureter	0%	0	0 / 0	100%	12.40	1 / 1
blood vessel	100%	1602.44	1333 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	98%	25.64	78 / 80
heart	93%	1274.26	804 / 861	0%	0	0 / 0
peripheral blood	60%	1081.93	562 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0