Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 9 studies | 31% ± 13% | |
glutamatergic neuron | 8 studies | 40% ± 22% | |
goblet cell | 8 studies | 38% ± 21% | |
oligodendrocyte | 8 studies | 25% ± 10% | |
oligodendrocyte precursor cell | 8 studies | 25% ± 8% | |
endothelial cell | 7 studies | 23% ± 12% | |
macrophage | 7 studies | 24% ± 6% | |
GABAergic neuron | 6 studies | 50% ± 19% | |
microglial cell | 6 studies | 29% ± 11% | |
epithelial cell | 6 studies | 40% ± 16% | |
interneuron | 5 studies | 44% ± 13% | |
mucus secreting cell | 5 studies | 32% ± 10% | |
fibroblast | 5 studies | 23% ± 3% | |
neuron | 4 studies | 26% ± 12% | |
retinal bipolar neuron | 4 studies | 28% ± 9% | |
respiratory goblet cell | 4 studies | 35% ± 14% | |
type II pneumocyte | 4 studies | 22% ± 6% | |
granule cell | 3 studies | 41% ± 13% | |
myeloid cell | 3 studies | 19% ± 4% | |
club cell | 3 studies | 29% ± 4% | |
OFF-bipolar cell | 3 studies | 41% ± 17% | |
amacrine cell | 3 studies | 33% ± 10% | |
retinal rod cell | 3 studies | 21% ± 4% | |
rod bipolar cell | 3 studies | 57% ± 21% | |
endothelial cell of lymphatic vessel | 3 studies | 16% ± 1% | |
dendritic cell | 3 studies | 21% ± 4% | |
basal cell | 3 studies | 39% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2948.99 | 245 / 245 | 100% | 117.08 | 500 / 502 |
intestine | 100% | 2490.06 | 966 / 966 | 96% | 38.17 | 508 / 527 |
stomach | 100% | 2579.72 | 359 / 359 | 96% | 33.24 | 274 / 286 |
lung | 99% | 868.67 | 570 / 578 | 96% | 30.35 | 1108 / 1155 |
breast | 99% | 1606.88 | 456 / 459 | 95% | 59.14 | 1063 / 1118 |
esophagus | 100% | 1446.68 | 1444 / 1445 | 94% | 33.99 | 172 / 183 |
thymus | 100% | 1219.99 | 652 / 653 | 92% | 43.86 | 558 / 605 |
pancreas | 100% | 1822.01 | 328 / 328 | 92% | 25.92 | 163 / 178 |
bladder | 100% | 1457.67 | 21 / 21 | 90% | 24.04 | 452 / 504 |
uterus | 100% | 1553.09 | 170 / 170 | 81% | 22.34 | 370 / 459 |
ovary | 100% | 1312.69 | 180 / 180 | 59% | 8.15 | 253 / 430 |
brain | 99% | 1500.83 | 2607 / 2642 | 54% | 7.04 | 382 / 705 |
kidney | 99% | 842.98 | 88 / 89 | 50% | 7.31 | 450 / 901 |
skin | 86% | 819.99 | 1555 / 1809 | 55% | 8.55 | 259 / 472 |
adrenal gland | 98% | 797.00 | 252 / 258 | 17% | 2.52 | 38 / 230 |
spleen | 100% | 1123.64 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1368.74 | 1331 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 784.28 | 1189 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 78% | 1105.72 | 729 / 929 | 0% | 0 | 0 / 0 |
heart | 77% | 372.96 | 662 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 60% | 12.56 | 27 / 45 |
lymph node | 0% | 0 | 0 / 0 | 52% | 6.45 | 15 / 29 |
muscle | 9% | 33.03 | 73 / 803 | 0% | 0 | 0 / 0 |
liver | 1% | 5.62 | 3 / 226 | 7% | 1.06 | 29 / 406 |
eye | 0% | 0 | 0 / 0 | 6% | 0.69 | 5 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0016266 | Biological process | O-glycan processing |
GO_0005975 | Biological process | carbohydrate metabolic process |
GO_0006493 | Biological process | protein O-linked glycosylation |
GO_0000139 | Cellular component | Golgi membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0016020 | Cellular component | membrane |
GO_0004653 | Molecular function | polypeptide N-acetylgalactosaminyltransferase activity |
GO_0030246 | Molecular function | carbohydrate binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | GALNT7 |
Protein name | Polypeptide N-acetylgalactosaminyltransferase 7 Polypeptide N-acetylgalactosaminyltransferase (EC 2.4.1.-) (Protein-UDP acetylgalactosaminyltransferase) N-acetylgalactosaminyltransferase 7 (EC 2.4.1.41) (Polypeptide GalNAc transferase 7) (GalNAc-T7) (pp-GaNTase 7) (Protein-UDP acetylgalactosaminyltransferase 7) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7) Uncharacterized protein GALNT7 |
Synonyms | |
Description | FUNCTION: Glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified. . |
Accessions | ENST00000265000.9 ENST00000512285.5 Q68VJ4 E9PBY3 H0YAK0 Q86SF2 H0YAH3 Q4W5F7 ENST00000503213.1 ENST00000505308.6 |