Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 25% ± 10% | |
GABAergic neuron | 7 studies | 34% ± 20% | |
oligodendrocyte | 7 studies | 25% ± 8% | |
astrocyte | 6 studies | 30% ± 11% | |
interneuron | 5 studies | 35% ± 22% | |
oligodendrocyte precursor cell | 5 studies | 28% ± 10% | |
glutamatergic neuron | 5 studies | 45% ± 23% | |
microglial cell | 4 studies | 25% ± 6% | |
epithelial cell | 4 studies | 38% ± 8% | |
adipocyte | 4 studies | 20% ± 4% | |
hepatocyte | 4 studies | 37% ± 16% | |
fibroblast | 4 studies | 20% ± 6% | |
macrophage | 4 studies | 24% ± 4% | |
goblet cell | 4 studies | 27% ± 15% | |
ciliated cell | 3 studies | 23% ± 2% | |
Mueller cell | 3 studies | 17% ± 1% | |
abnormal cell | 3 studies | 28% ± 12% | |
endothelial cell of lymphatic vessel | 3 studies | 19% ± 3% | |
smooth muscle cell | 3 studies | 16% ± 0% | |
basal cell | 3 studies | 30% ± 11% | |
transit amplifying cell | 3 studies | 28% ± 16% | |
neuron | 3 studies | 31% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 37% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3715.67 | 1445 / 1445 | 100% | 39.05 | 183 / 183 |
intestine | 100% | 3711.98 | 966 / 966 | 100% | 31.51 | 527 / 527 |
stomach | 100% | 2840.06 | 359 / 359 | 100% | 31.29 | 286 / 286 |
brain | 100% | 2839.28 | 2641 / 2642 | 100% | 54.75 | 705 / 705 |
lung | 100% | 3003.83 | 578 / 578 | 100% | 31.81 | 1154 / 1155 |
ovary | 100% | 3693.25 | 180 / 180 | 100% | 22.82 | 429 / 430 |
thymus | 100% | 5382.81 | 653 / 653 | 100% | 43.76 | 602 / 605 |
breast | 100% | 3668.43 | 459 / 459 | 99% | 35.17 | 1112 / 1118 |
pancreas | 100% | 2089.49 | 327 / 328 | 99% | 26.37 | 177 / 178 |
prostate | 100% | 3400.17 | 245 / 245 | 99% | 35.26 | 497 / 502 |
bladder | 100% | 3733.71 | 21 / 21 | 99% | 25.68 | 498 / 504 |
uterus | 100% | 4724.32 | 170 / 170 | 98% | 29.93 | 450 / 459 |
kidney | 100% | 2447.65 | 89 / 89 | 98% | 25.41 | 883 / 901 |
skin | 100% | 3956.84 | 1809 / 1809 | 97% | 29.09 | 459 / 472 |
adrenal gland | 100% | 3491.09 | 258 / 258 | 97% | 24.55 | 222 / 230 |
liver | 100% | 2879.38 | 226 / 226 | 96% | 20.00 | 388 / 406 |
adipose | 100% | 3540.51 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4130.42 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 2754.90 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 30.56 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.24 | 1 / 1 |
muscle | 99% | 1547.87 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 2058.67 | 851 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 18.88 | 73 / 80 |
lymph node | 0% | 0 | 0 / 0 | 86% | 18.61 | 25 / 29 |
peripheral blood | 42% | 944.47 | 389 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008298 | Biological process | intracellular mRNA localization |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0043198 | Cellular component | dendritic shaft |
GO_0005654 | Cellular component | nucleoplasm |
GO_0043025 | Cellular component | neuronal cell body |
GO_0016020 | Cellular component | membrane |
GO_0005840 | Cellular component | ribosome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003697 | Molecular function | single-stranded DNA binding |
GO_0003729 | Molecular function | mRNA binding |
Gene name | FUBP3 |
Protein name | Far upstream element-binding protein 3 (FUSE-binding protein 3) Far upstream element binding protein 3 |
Synonyms | FBP3 |
Description | FUNCTION: May interact with single-stranded DNA from the far-upstream element (FUSE). May activate gene expression. |
Accessions | A0A494C1K6 Q96I24 ENST00000650723.1 ENST00000319725.10 [Q96I24-1] ENST00000699747.1 A0A8V8TNQ2 |