Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 17 studies | 43% ± 17% | |
oligodendrocyte | 15 studies | 84% ± 15% | |
oligodendrocyte precursor cell | 13 studies | 55% ± 14% | |
glutamatergic neuron | 12 studies | 61% ± 25% | |
GABAergic neuron | 10 studies | 70% ± 21% | |
neuron | 6 studies | 47% ± 21% | |
interneuron | 5 studies | 70% ± 15% | |
cardiac muscle cell | 5 studies | 27% ± 3% | |
endothelial cell | 4 studies | 52% ± 13% | |
granule cell | 4 studies | 54% ± 12% | |
microglial cell | 4 studies | 35% ± 12% | |
amacrine cell | 4 studies | 58% ± 22% | |
Mueller cell | 4 studies | 75% ± 7% | |
retinal ganglion cell | 4 studies | 74% ± 12% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 80% ± 2% | |
glial cell | 3 studies | 50% ± 18% | |
GABAergic amacrine cell | 3 studies | 87% ± 2% | |
OFF-bipolar cell | 3 studies | 49% ± 10% | |
glycinergic amacrine cell | 3 studies | 73% ± 7% | |
retinal pigment epithelial cell | 3 studies | 46% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2023.56 | 2642 / 2642 | 99% | 35.51 | 700 / 705 |
adrenal gland | 100% | 1611.12 | 257 / 258 | 63% | 5.04 | 145 / 230 |
intestine | 42% | 162.28 | 401 / 966 | 66% | 3.58 | 346 / 527 |
stomach | 45% | 128.10 | 161 / 359 | 62% | 3.60 | 176 / 286 |
heart | 93% | 1297.61 | 800 / 861 | 0% | 0 | 0 / 0 |
skin | 0% | 1.22 | 8 / 1809 | 78% | 10.16 | 367 / 472 |
pancreas | 1% | 3.64 | 3 / 328 | 70% | 3.47 | 124 / 178 |
ovary | 5% | 22.06 | 9 / 180 | 63% | 3.94 | 273 / 430 |
esophagus | 21% | 64.73 | 299 / 1445 | 43% | 2.51 | 78 / 183 |
bladder | 14% | 47.24 | 3 / 21 | 37% | 1.99 | 184 / 504 |
thymus | 2% | 5.94 | 15 / 653 | 47% | 4.60 | 285 / 605 |
lung | 1% | 4.48 | 7 / 578 | 44% | 2.50 | 513 / 1155 |
uterus | 1% | 2.50 | 1 / 170 | 23% | 1.10 | 104 / 459 |
prostate | 18% | 47.22 | 43 / 245 | 1% | 0.02 | 4 / 502 |
kidney | 6% | 15.45 | 5 / 89 | 11% | 0.38 | 95 / 901 |
breast | 3% | 6.63 | 12 / 459 | 9% | 0.40 | 102 / 1118 |
tonsil | 0% | 0 | 0 / 0 | 7% | 0.20 | 3 / 45 |
liver | 0% | 0 | 0 / 226 | 4% | 0.21 | 16 / 406 |
eye | 0% | 0 | 0 / 0 | 4% | 0.27 | 3 / 80 |
blood vessel | 4% | 14.72 | 49 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.24 | 1 / 29 |
adipose | 3% | 6.96 | 31 / 1204 | 0% | 0 | 0 / 0 |
spleen | 1% | 3.17 | 3 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.45 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0031032 | Biological process | actomyosin structure organization |
GO_0030334 | Biological process | regulation of cell migration |
GO_0045785 | Biological process | positive regulation of cell adhesion |
GO_2000146 | Biological process | negative regulation of cell motility |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005912 | Cellular component | adherens junction |
GO_0016020 | Cellular component | membrane |
GO_0019901 | Molecular function | protein kinase binding |
GO_0008092 | Molecular function | cytoskeletal protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0005178 | Molecular function | integrin binding |
Gene name | FRMD5 |
Protein name | FERM domain containing 5 FERM domain containing 5, isoform CRA_a (cDNA FLJ75251) FERM domain-containing protein 5 |
Synonyms | hCG_1644657 |
Description | FUNCTION: May be involved in regulation of cell migration . May regulate cell-matrix interactions via its interaction with ITGB5 and modifying ITGB5 cytoplasmic tail interactions such as with FERMT2 and TLN1. May regulate ROCK1 kinase activity possibly involved in regulation of actin stress fiber formation . |
Accessions | F8WCI0 F8WEJ8 H7C282 H0YKW6 ENST00000449926.5 ENST00000636859.1 ENST00000421674.5 H0Y5N1 ENST00000558108.6 ENST00000458630.5 A0A087WVP2 Q7Z6J6 ENST00000618556.4 ENST00000451277.5 B5MC67 ENST00000484674.5 ENST00000417257.6 [Q7Z6J6-1] ENST00000402883.5 H0YNI9 A0A1B0GV18 A8K1U8 |