Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 5 studies | 26% ± 5% | |
astrocyte | 4 studies | 24% ± 5% | |
endothelial cell | 3 studies | 20% ± 3% | |
GABAergic neuron | 3 studies | 44% ± 12% | |
glutamatergic neuron | 3 studies | 55% ± 17% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 3% | |
transit amplifying cell | 3 studies | 26% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1630.97 | 1444 / 1445 | 100% | 17.12 | 183 / 183 |
breast | 100% | 1750.23 | 459 / 459 | 100% | 16.67 | 1117 / 1118 |
intestine | 100% | 1634.76 | 966 / 966 | 100% | 16.50 | 526 / 527 |
prostate | 100% | 1274.83 | 245 / 245 | 100% | 16.93 | 501 / 502 |
ovary | 100% | 1637.90 | 180 / 180 | 100% | 13.62 | 429 / 430 |
stomach | 100% | 1366.09 | 359 / 359 | 100% | 15.79 | 285 / 286 |
uterus | 100% | 1725.18 | 170 / 170 | 100% | 12.57 | 457 / 459 |
thymus | 100% | 1613.76 | 653 / 653 | 100% | 13.19 | 602 / 605 |
bladder | 100% | 1630.81 | 21 / 21 | 99% | 13.54 | 501 / 504 |
liver | 100% | 1190.20 | 225 / 226 | 100% | 9.28 | 405 / 406 |
lung | 99% | 1310.86 | 573 / 578 | 100% | 15.06 | 1155 / 1155 |
pancreas | 99% | 905.52 | 326 / 328 | 99% | 11.75 | 177 / 178 |
kidney | 100% | 1081.75 | 89 / 89 | 99% | 13.12 | 889 / 901 |
skin | 100% | 2055.55 | 1809 / 1809 | 97% | 15.76 | 460 / 472 |
brain | 97% | 719.44 | 2560 / 2642 | 100% | 13.41 | 705 / 705 |
adrenal gland | 100% | 1840.00 | 258 / 258 | 96% | 11.03 | 220 / 230 |
adipose | 100% | 1741.59 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1431.06 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 12.69 | 29 / 29 |
muscle | 100% | 2564.94 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1338.74 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 13.49 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.21 | 1 / 1 |
heart | 96% | 1735.43 | 830 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 12.67 | 76 / 80 |
peripheral blood | 63% | 884.33 | 585 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0044528 | Biological process | regulation of mitochondrial mRNA stability |
GO_0006915 | Biological process | apoptotic process |
GO_0070131 | Biological process | positive regulation of mitochondrial translation |
GO_0032543 | Biological process | mitochondrial translation |
GO_0000963 | Biological process | mitochondrial RNA processing |
GO_1902775 | Biological process | mitochondrial large ribosomal subunit assembly |
GO_0006396 | Biological process | RNA processing |
GO_0035770 | Cellular component | ribonucleoprotein granule |
GO_0005739 | Cellular component | mitochondrion |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0042645 | Cellular component | mitochondrial nucleoid |
GO_0019843 | Molecular function | rRNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | FASTKD2 |
Protein name | FAST kinase domain-containing protein 2, mitochondrial FAST kinase domains 2 |
Synonyms | KIAA0971 |
Description | FUNCTION: Plays an important role in assembly of the mitochondrial large ribosomal subunit . As a component of a functional protein-RNA module, consisting of RCC1L, NGRN, RPUSD3, RPUSD4, TRUB2, FASTKD2 and 16S mitochondrial ribosomal RNA (16S mt-rRNA), controls 16S mt-rRNA abundance and is required for intra-mitochondrial translation . May play a role in mitochondrial apoptosis. . |
Accessions | ENST00000236980.10 [Q9NYY8-1] Q9NYY8 C9JPI6 ENST00000418289.1 ENST00000402774.8 [Q9NYY8-1] ENST00000403094.3 [Q9NYY8-1] |