Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 15 studies | 40% ± 17% | |
microglial cell | 15 studies | 42% ± 17% | |
astrocyte | 15 studies | 34% ± 17% | |
fibroblast | 15 studies | 32% ± 12% | |
macrophage | 14 studies | 36% ± 19% | |
oligodendrocyte precursor cell | 13 studies | 40% ± 17% | |
glutamatergic neuron | 12 studies | 46% ± 24% | |
pericyte | 12 studies | 32% ± 13% | |
endothelial cell | 12 studies | 37% ± 17% | |
adipocyte | 10 studies | 57% ± 19% | |
epithelial cell | 9 studies | 30% ± 11% | |
smooth muscle cell | 8 studies | 26% ± 8% | |
basal cell | 7 studies | 30% ± 15% | |
club cell | 7 studies | 35% ± 16% | |
myeloid cell | 7 studies | 28% ± 10% | |
type I pneumocyte | 7 studies | 26% ± 9% | |
type II pneumocyte | 6 studies | 36% ± 9% | |
GABAergic neuron | 5 studies | 43% ± 13% | |
interneuron | 5 studies | 38% ± 16% | |
dendritic cell | 5 studies | 22% ± 6% | |
monocyte | 5 studies | 29% ± 8% | |
neuron | 4 studies | 28% ± 11% | |
granule cell | 4 studies | 34% ± 8% | |
retinal ganglion cell | 4 studies | 32% ± 23% | |
retinal pigment epithelial cell | 4 studies | 48% ± 21% | |
cardiac muscle cell | 4 studies | 24% ± 1% | |
Mueller cell | 4 studies | 29% ± 19% | |
amacrine cell | 4 studies | 25% ± 2% | |
goblet cell | 4 studies | 22% ± 3% | |
myofibroblast cell | 4 studies | 24% ± 10% | |
kidney loop of Henle epithelial cell | 4 studies | 22% ± 6% | |
glial cell | 3 studies | 26% ± 11% | |
progenitor cell | 3 studies | 32% ± 11% | |
glycinergic amacrine cell | 3 studies | 26% ± 4% | |
retinal cone cell | 3 studies | 29% ± 13% | |
retinal rod cell | 3 studies | 28% ± 6% | |
neural progenitor cell | 3 studies | 34% ± 11% | |
ependymal cell | 3 studies | 43% ± 18% | |
connective tissue cell | 3 studies | 32% ± 10% | |
alveolar macrophage | 3 studies | 21% ± 5% | |
respiratory goblet cell | 3 studies | 39% ± 17% | |
oligodendrocyte | 3 studies | 34% ± 22% | |
hepatocyte | 3 studies | 30% ± 8% | |
epithelial cell of proximal tubule | 3 studies | 22% ± 4% | |
renal alpha-intercalated cell | 3 studies | 21% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 2315.91 | 89 / 89 | 99% | 23.67 | 891 / 901 |
thymus | 100% | 5373.56 | 653 / 653 | 99% | 15.52 | 597 / 605 |
prostate | 100% | 2263.31 | 244 / 245 | 99% | 8.54 | 495 / 502 |
pancreas | 100% | 3101.31 | 328 / 328 | 97% | 8.16 | 173 / 178 |
lung | 99% | 2248.71 | 572 / 578 | 96% | 10.06 | 1109 / 1155 |
brain | 94% | 1854.76 | 2491 / 2642 | 99% | 9.26 | 701 / 705 |
intestine | 100% | 2608.71 | 966 / 966 | 92% | 8.91 | 487 / 527 |
bladder | 100% | 3525.52 | 21 / 21 | 92% | 9.03 | 464 / 504 |
stomach | 100% | 2619.31 | 359 / 359 | 88% | 7.44 | 251 / 286 |
ovary | 100% | 3661.43 | 180 / 180 | 86% | 4.26 | 369 / 430 |
breast | 100% | 4330.28 | 459 / 459 | 85% | 4.64 | 953 / 1118 |
esophagus | 95% | 1629.80 | 1371 / 1445 | 86% | 4.84 | 158 / 183 |
uterus | 100% | 2942.45 | 170 / 170 | 80% | 5.52 | 365 / 459 |
skin | 100% | 3680.07 | 1809 / 1809 | 78% | 4.66 | 370 / 472 |
adrenal gland | 99% | 2296.16 | 256 / 258 | 76% | 3.63 | 174 / 230 |
liver | 95% | 2640.10 | 215 / 226 | 47% | 2.87 | 192 / 406 |
adipose | 100% | 4924.52 | 1204 / 1204 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.56 | 1 / 1 |
blood vessel | 100% | 2790.29 | 1333 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1261.82 | 240 / 241 | 0% | 0 | 0 / 0 |
muscle | 93% | 1157.42 | 744 / 803 | 0% | 0 | 0 / 0 |
heart | 90% | 1192.50 | 776 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 78% | 4.27 | 35 / 45 |
eye | 0% | 0 | 0 / 0 | 71% | 3.38 | 57 / 80 |
peripheral blood | 58% | 568.15 | 535 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.17 | 2 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007165 | Biological process | signal transduction |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0005829 | Cellular component | cytosol |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | FAM13A |
Protein name | Family with sequence similarity 13 member A Alternative protein FAM13A FAM13A protein (Family with sequence similarity 13 member A) FAM13A Protein FAM13A |
Synonyms | KIAA0914 FAM13A1 |
Description | |
Accessions | ENST00000513837.5 [O94988-6] ENST00000395002.6 [O94988-3] ENST00000511976.5 ENST00000503556.5 [O94988-5] ENST00000507352.1 D6RFM4 D6RD35 Q6P521 ENST00000512339.5 ENST00000506913.1 ENST00000504836.5 D6RCC1 ENST00000509094.5 E9PGM7 ENST00000515600.1 D6RIY4 D6RGE4 ENST00000508369.5 [O94988-1] ENST00000264344.10 [O94988-4] L0R4X6 O94988 A0A2X0SFT1 |