Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 30% ± 12% | |
oligodendrocyte precursor cell | 13 studies | 38% ± 19% | |
astrocyte | 13 studies | 39% ± 20% | |
oligodendrocyte | 12 studies | 36% ± 14% | |
glutamatergic neuron | 11 studies | 40% ± 26% | |
microglial cell | 9 studies | 25% ± 9% | |
fibroblast | 8 studies | 24% ± 9% | |
GABAergic neuron | 7 studies | 47% ± 22% | |
interneuron | 6 studies | 44% ± 24% | |
macrophage | 6 studies | 31% ± 7% | |
neuron | 5 studies | 34% ± 16% | |
epithelial cell | 5 studies | 25% ± 9% | |
adipocyte | 5 studies | 22% ± 2% | |
endothelial cell of lymphatic vessel | 5 studies | 22% ± 4% | |
pericyte | 5 studies | 28% ± 9% | |
smooth muscle cell | 5 studies | 22% ± 4% | |
granule cell | 4 studies | 22% ± 3% | |
GABAergic interneuron | 3 studies | 27% ± 2% | |
cardiac muscle cell | 3 studies | 16% ± 1% | |
GABAergic amacrine cell | 3 studies | 22% ± 8% | |
amacrine cell | 3 studies | 26% ± 6% | |
glycinergic amacrine cell | 3 studies | 22% ± 4% | |
retina horizontal cell | 3 studies | 27% ± 11% | |
hepatocyte | 3 studies | 31% ± 14% | |
connective tissue cell | 3 studies | 21% ± 3% | |
ependymal cell | 3 studies | 31% ± 15% | |
lymphocyte | 3 studies | 24% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1012.00 | 1445 / 1445 | 100% | 5.96 | 183 / 183 |
prostate | 100% | 1238.49 | 245 / 245 | 100% | 5.47 | 500 / 502 |
lung | 100% | 999.43 | 578 / 578 | 99% | 3.99 | 1149 / 1155 |
thymus | 100% | 1299.07 | 653 / 653 | 99% | 5.44 | 600 / 605 |
stomach | 100% | 879.42 | 359 / 359 | 99% | 4.40 | 283 / 286 |
brain | 99% | 665.39 | 2605 / 2642 | 100% | 7.01 | 705 / 705 |
intestine | 100% | 1131.76 | 966 / 966 | 98% | 3.83 | 519 / 527 |
breast | 100% | 1091.94 | 459 / 459 | 98% | 4.86 | 1098 / 1118 |
pancreas | 99% | 473.84 | 324 / 328 | 99% | 3.71 | 176 / 178 |
bladder | 100% | 1371.48 | 21 / 21 | 97% | 3.24 | 489 / 504 |
kidney | 100% | 770.93 | 89 / 89 | 97% | 4.22 | 874 / 901 |
uterus | 100% | 1310.85 | 170 / 170 | 97% | 3.66 | 443 / 459 |
adrenal gland | 100% | 1017.51 | 258 / 258 | 96% | 4.60 | 221 / 230 |
ovary | 100% | 1458.17 | 180 / 180 | 95% | 2.37 | 409 / 430 |
skin | 100% | 1013.79 | 1809 / 1809 | 91% | 4.50 | 429 / 472 |
liver | 100% | 459.69 | 226 / 226 | 75% | 1.61 | 305 / 406 |
adipose | 100% | 1134.05 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1210.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 6.06 | 29 / 29 |
spleen | 100% | 1025.36 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 4.70 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.50 | 1 / 1 |
muscle | 100% | 673.16 | 800 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 640.83 | 820 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 71% | 2.22 | 57 / 80 |
peripheral blood | 65% | 445.16 | 600 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034614 | Biological process | cellular response to reactive oxygen species |
GO_0036297 | Biological process | interstrand cross-link repair |
GO_0006338 | Biological process | chromatin remodeling |
GO_0005813 | Cellular component | centrosome |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0005739 | Cellular component | mitochondrion |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0140658 | Molecular function | ATP-dependent chromatin remodeler activity |
GO_0004386 | Molecular function | helicase activity |
GO_0016787 | Molecular function | hydrolase activity |
GO_0019901 | Molecular function | protein kinase binding |
GO_0005515 | Molecular function | protein binding |
GO_0005524 | Molecular function | ATP binding |
Gene name | ERCC6L2 |
Protein name | DNA excision repair protein ERCC-6-like 2 (EC 3.6.4.-) (DNA repair and recombination protein RAD26-like) ERCC excision repair 6 like 2 |
Synonyms | hCG_1738516 RAD26L C9orf102 LOC375748 |
Description | FUNCTION: May be involved in early DNA damage response. . |
Accessions | S4R327 ENST00000653324.2 ENST00000668220.1 A0A5F9UKL4 X6RE28 ENST00000683128.1 ENST00000661047.1 A0A804HL79 ENST00000682748.1 H0Y3T7 ENST00000456993.7 A0A590UJA1 ENST00000288985.13 ENST00000426805.2 A0A804HJ75 A0A590UJ12 A0A804HJC4 ENST00000653738.2 [Q5T890-1] ENST00000288985.13 [Q5T890-2] A0A590UJV1 A0A590UJI9 ENST00000683350.1 ENST00000683991.1 ENST00000402838.3 A0A590UJK0 ENST00000670016.1 ENST00000682983.1 [Q5T890-1] A0A804HK79 F2Z2R4 ENST00000659728.1 Q5T890 ENST00000683937.1 ENST00000479391.7 |