Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 24% ± 12% | |
type I pneumocyte | 5 studies | 23% ± 7% | |
epithelial cell | 4 studies | 28% ± 13% | |
capillary endothelial cell | 3 studies | 18% ± 2% | |
B cell | 3 studies | 21% ± 8% | |
fibroblast | 3 studies | 24% ± 7% | |
ciliated cell | 3 studies | 26% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 3 studies | 21% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 4622.14 | 459 / 459 | 88% | 4.71 | 984 / 1118 |
brain | 100% | 4620.32 | 2636 / 2642 | 87% | 2.38 | 610 / 705 |
pancreas | 96% | 1657.39 | 316 / 328 | 90% | 2.41 | 160 / 178 |
esophagus | 100% | 4405.43 | 1445 / 1445 | 81% | 1.98 | 149 / 183 |
lung | 100% | 7314.71 | 578 / 578 | 79% | 2.53 | 907 / 1155 |
thymus | 100% | 5815.44 | 653 / 653 | 78% | 1.82 | 474 / 605 |
intestine | 100% | 5396.25 | 966 / 966 | 76% | 1.75 | 403 / 527 |
uterus | 100% | 5827.14 | 170 / 170 | 75% | 2.04 | 342 / 459 |
adrenal gland | 100% | 4923.50 | 258 / 258 | 73% | 1.60 | 169 / 230 |
skin | 100% | 3079.44 | 1806 / 1809 | 74% | 1.80 | 347 / 472 |
stomach | 100% | 3387.67 | 359 / 359 | 73% | 1.55 | 208 / 286 |
bladder | 100% | 5376.71 | 21 / 21 | 72% | 1.74 | 361 / 504 |
prostate | 100% | 5735.00 | 245 / 245 | 62% | 1.21 | 311 / 502 |
ovary | 100% | 5391.76 | 180 / 180 | 60% | 1.44 | 259 / 430 |
kidney | 100% | 4043.56 | 89 / 89 | 60% | 1.45 | 539 / 901 |
liver | 100% | 2539.72 | 226 / 226 | 39% | 0.74 | 158 / 406 |
adipose | 100% | 5044.23 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 10006.08 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4276.72 | 1333 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 9464.35 | 927 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 2982.19 | 856 / 861 | 0% | 0 | 0 / 0 |
muscle | 97% | 2105.85 | 779 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 69% | 2.61 | 20 / 29 |
tonsil | 0% | 0 | 0 / 0 | 62% | 1.32 | 28 / 45 |
eye | 0% | 0 | 0 / 0 | 33% | 0.57 | 26 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045454 | Biological process | cell redox homeostasis |
GO_0045732 | Biological process | positive regulation of protein catabolic process |
GO_0018401 | Biological process | peptidyl-proline hydroxylation to 4-hydroxy-L-proline |
GO_0001558 | Biological process | regulation of cell growth |
GO_0001666 | Biological process | response to hypoxia |
GO_0030520 | Biological process | estrogen receptor signaling pathway |
GO_0043523 | Biological process | regulation of neuron apoptotic process |
GO_0071456 | Biological process | cellular response to hypoxia |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0019826 | Molecular function | oxygen sensor activity |
GO_0008198 | Molecular function | ferrous iron binding |
GO_0005515 | Molecular function | protein binding |
GO_0160082 | Molecular function | hypoxia-inducible factor-proline dioxygenase activity |
GO_0031418 | Molecular function | L-ascorbic acid binding |
GO_0031545 | Molecular function | peptidyl-proline 4-dioxygenase activity |
GO_0016706 | Molecular function | 2-oxoglutarate-dependent dioxygenase activity |
Gene name | EGLN2 |
Protein name | Alternative protein EGLN2 Egl-9 family hypoxia inducible factor 2 Prolyl hydroxylase EGLN2 (EC 1.14.11.-) (Egl nine homolog 2) (EC 1.14.11.29) (Estrogen-induced tag 6) (EIT-6) (HPH-3) (Hypoxia-inducible factor prolyl hydroxylase 1) (HIF-PH1) (HIF-prolyl hydroxylase 1) (HPH-1) (Prolyl hydroxylase domain-containing protein 1) (PHD1) hypoxia-inducible factor-proline dioxygenase (EC 1.14.11.29) |
Synonyms | EIT6 |
Description | FUNCTION: Prolyl hydroxylase that mediates hydroxylation of proline residues in target proteins, such as ATF4, IKBKB, CEP192 and HIF1A . Target proteins are preferentially recognized via a LXXLAP motif . Cellular oxygen sensor that catalyzes, under normoxic conditions, the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins . Hydroxylates a specific proline found in each of the oxygen-dependent degradation (ODD) domains (N-terminal, NODD, and C-terminal, CODD) of HIF1A . Also hydroxylates HIF2A . Has a preference for the CODD site for both HIF1A and HIF2A . Hydroxylated HIFs are then targeted for proteasomal degradation via the von Hippel-Lindau ubiquitination complex . Under hypoxic conditions, the hydroxylation reaction is attenuated allowing HIFs to escape degradation resulting in their translocation to the nucleus, heterodimerization with HIF1B, and increased expression of hypoxy-inducible genes . EGLN2 is involved in regulating hypoxia tolerance and apoptosis in cardiac and skeletal muscle . Also regulates susceptibility to normoxic oxidative neuronal death . Links oxygen sensing to cell cycle and primary cilia formation by hydroxylating the critical centrosome component CEP192 which promotes its ubiquitination and subsequent proteasomal degradation . Hydroxylates IKBKB, mediating NF-kappa-B activation in hypoxic conditions . Also mediates hydroxylation of ATF4, leading to decreased protein stability of ATF4 (By similarity). . |
Accessions | M0QXM8 ENST00000596517.1 ENST00000406058.6 [Q96KS0-1] ENST00000597746.5 Q96KS0 ENST00000593397.1 ENST00000303961.9 [Q96KS0-1] M0R350 ENST00000594380.1 ENST00000595051.1 M0R035 ENST00000598654.1 M0R1W4 ENST00000601733.1 ENST00000593972.1 M0R0Z6 ENST00000593525.1 ENST00000595621.1 ENST00000594140.5 M0R1L0 ENST00000593726.5 [Q96KS0-1] M0R110 M0QXR0 M0R1A3 M0R2X9 L8EAM8 A0A0C4DGR4 |