Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 20 studies | 72% ± 17% | |
fibroblast | 8 studies | 21% ± 4% | |
astrocyte | 7 studies | 34% ± 16% | |
epithelial cell | 6 studies | 30% ± 10% | |
endothelial cell | 6 studies | 25% ± 8% | |
retinal rod cell | 6 studies | 23% ± 4% | |
deuterosomal cell | 4 studies | 35% ± 2% | |
pericyte | 4 studies | 21% ± 3% | |
retinal cone cell | 4 studies | 40% ± 17% | |
GABAergic neuron | 4 studies | 37% ± 12% | |
glutamatergic neuron | 4 studies | 46% ± 12% | |
oligodendrocyte | 4 studies | 26% ± 14% | |
oligodendrocyte precursor cell | 3 studies | 21% ± 4% | |
ependymal cell | 3 studies | 55% ± 12% | |
basal cell | 3 studies | 25% ± 5% | |
mesothelial cell | 3 studies | 38% ± 13% | |
interneuron | 3 studies | 37% ± 14% | |
neuron | 3 studies | 30% ± 3% | |
plasmacytoid dendritic cell | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 4605.77 | 653 / 653 | 98% | 4.45 | 594 / 605 |
brain | 98% | 1438.80 | 2585 / 2642 | 100% | 5.53 | 704 / 705 |
prostate | 100% | 2940.84 | 245 / 245 | 97% | 2.55 | 485 / 502 |
pancreas | 99% | 1244.88 | 326 / 328 | 96% | 2.99 | 171 / 178 |
breast | 100% | 2572.67 | 457 / 459 | 95% | 3.86 | 1059 / 1118 |
ovary | 100% | 2536.28 | 180 / 180 | 94% | 3.65 | 405 / 430 |
esophagus | 100% | 1716.08 | 1443 / 1445 | 93% | 2.43 | 171 / 183 |
skin | 100% | 2083.87 | 1809 / 1809 | 89% | 3.20 | 418 / 472 |
kidney | 100% | 2220.90 | 89 / 89 | 88% | 3.61 | 796 / 901 |
lung | 100% | 2803.20 | 577 / 578 | 88% | 2.57 | 1022 / 1155 |
uterus | 100% | 3390.58 | 170 / 170 | 84% | 2.62 | 384 / 459 |
adrenal gland | 100% | 1659.05 | 257 / 258 | 82% | 2.80 | 188 / 230 |
bladder | 100% | 1866.33 | 21 / 21 | 79% | 1.88 | 396 / 504 |
stomach | 99% | 1660.73 | 357 / 359 | 75% | 1.52 | 215 / 286 |
intestine | 100% | 2089.30 | 966 / 966 | 69% | 1.36 | 363 / 527 |
liver | 84% | 623.49 | 190 / 226 | 25% | 0.60 | 101 / 406 |
spleen | 100% | 1629.15 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 1993.31 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 98% | 1300.25 | 1312 / 1335 | 0% | 0 | 0 / 0 |
heart | 91% | 906.66 | 780 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 81% | 2.50 | 65 / 80 |
tonsil | 0% | 0 | 0 / 0 | 76% | 1.46 | 34 / 45 |
lymph node | 0% | 0 | 0 / 0 | 55% | 0.93 | 16 / 29 |
peripheral blood | 21% | 178.62 | 199 / 929 | 0% | 0 | 0 / 0 |
muscle | 21% | 120.77 | 169 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0000281 | Biological process | mitotic cytokinesis |
GO_0021795 | Biological process | cerebral cortex cell migration |
GO_0051302 | Biological process | regulation of cell division |
GO_0007052 | Biological process | mitotic spindle organization |
GO_0060285 | Biological process | cilium-dependent cell motility |
GO_0005930 | Cellular component | axoneme |
GO_0072686 | Cellular component | mitotic spindle |
GO_0005879 | Cellular component | axonemal microtubule |
GO_0005813 | Cellular component | centrosome |
GO_0043025 | Cellular component | neuronal cell body |
GO_0000922 | Cellular component | spindle pole |
GO_0005509 | Molecular function | calcium ion binding |
GO_0043014 | Molecular function | alpha-tubulin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | EFHC1 |
Protein name | EF-hand domain-containing protein 1 (Myoclonin-1) EF-hand domain (C-terminal) containing 1, isoform CRA_a (EF-hand domain containing 1) EF-hand domain containing 1 |
Synonyms | hCG_21196 |
Description | FUNCTION: Microtubule-associated protein which regulates cell division and neuronal migration during cortical development. Necessary for mitotic spindle organization . Necessary for radial and tangential cell migration during brain development, possibly acting as a regulator of cell morphology and process formation during migration . May enhance calcium influx through CACNA1E and stimulate programmed cell death . Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating . . |
Accessions | ENST00000636107.1 A0A1B0GTM7 A0A1C7CYY1 ENST00000637263.1 A0A1B0GVP6 ENST00000636343.1 A0A1B0GTV4 ENST00000637602.1 ENST00000480623.6 ENST00000636398.1 A0A1B0GTD7 A0A1B0GU13 ENST00000637200.1 A0A1B0GTV6 A0A1B0GTH7 ENST00000635984.1 A0A1B0GVZ5 ENST00000636954.1 [Q5JVL4-3] ENST00000635812.1 A0A1B0GUE4 ENST00000636489.1 [Q5JVL4-3] A0A1B0GTF7 ENST00000538167.2 [Q5JVL4-3] ENST00000637353.1 A0A1B0GTW5 ENST00000638075.1 A0A1B0GTB1 A0A1B0GTH2 ENST00000635963.1 ENST00000637089.1 A0A1B0GVR3 ENST00000637315.1 B2CKC5 ENST00000636379.1 ENST00000636702.1 A0A1B0GV27 A0A1B0GVB0 ENST00000636566.1 Q5JVL4 ENST00000637874.1 A0A1B0GWB3 ENST00000635866.1 A0A1B0GUV2 ENST00000635996.1 A0A1B0GUP6 ENST00000635760.1 ENST00000371068.11 [Q5JVL4-1] |